BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg322424 Length=1389 Score E Sequences producing significant alignments: (Bits) Value AT2G47830.1 | Symbols: | Cation efflux family protein | chr2:1... 1960 0.0 > AT2G47830.1 | Symbols: | Cation efflux family protein | chr2:19590863-19594014 REVERSE LENGTH=1688 Length=1688 Score = 1960 bits (1061), Expect = 0.0 Identities = 1175/1228 (96%), Gaps = 15/1228 (1%) Strand=Plus/Plus Query 162 GCCTGGAGAAGAAGGGGAGAAGATTTTCCGGCTAGGTCTCACCGCAGATATAGGTTTATC 221 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 245 GCCTGGAGAAGAAGGGGAGAAGATATTCCGGCTAGGTCTCACCGCAGATATAGGTTTATC 304 Query 222 TGTCGCAAAAGCTCTCACCGGCTATCTCTGCGGCAGCACCGCCATTATAGCCGACGCTGC 281 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| Sbjct 305 TGTCGCAAAAGCTCTCACCGGTTATCTCTGCGGCAGCACCGCCATTATCGCCGATGCTGC 364 Query 282 TCATTCCGTTTCCGATGTGGTTCTAAGTGGAGTTGCTCTAGTGTCTTACAGAGCTGCAAA 341 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 365 TCATTCCGTTTCCGATGTGGTTCTAAGTGGTGTTGCTCTAGTGTCTTACAGAGCTGCAAA 424 Query 342 TGTTCCCAAGGACAAAGAACATCCATATGGTCATGGTAAATTTGAAACACTTGGAGCCCT 401 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || Sbjct 425 TGTTCCCAAGGACAAAGAACATCCTTATGGTCATGGTAAATTTGAAACGCTTGGAGCACT 484 Query 402 TGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCT 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TGGCATCTCTGCCATGCTTTTGGCTACTGGCTCTGGTATTGCCTGGCATGCTTTAGACCT 544 Query 462 TTTATCTATTGCCCTGTCCGCAGCTCCTGAGGTCCTTCATCATCACGGTGGACATCATCA 521 |||||||||||| |||||||||||||||||||| | |||| | ||||||||||||| Sbjct 545 TTTATCTATTGCACTGTCCGCAGCTCCTGAGGT-AAT--TCAT-A--GTGGACATCATCA 598 Query 522 CGGAATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTGT 581 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 599 CGGCATTGATATGAATCATCCCATTCTCGCTTTGACTGTTACTATTGCTTCCATTTCTAT 658 Query 582 CAAAGAAGGGCTTTATTGGATCACAAAACGAGCTGGAGAAAAACAAGGGAGTGGATTGAT 641 ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 659 CAAAGAAGGGCTTTATTGGATCACAAAACGAGCAGGTGAAAAACAAGGGAGTGGTTTGAT 718 Query 642 GATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTGTAGTTGCACTTGTTGG 701 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 719 GATGGCAAATGCTTGGCATCATCGATCAGATGCTATTTCTTCTCTAGTTGCACTTGTTGG 778 Query 702 AGTTGGAGGTTCTATGCTCGGAGTTAACTTTTTAGATCCTCTAGCTGGCCTCGTTGTCTC 761 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 779 AGTTGGAGGTTCTATTCTCGGAGTTAATTTTTTAGATCCTCTAGCTGGCCTTGTTGTCTC 838 Query 762 GACAATGATTTTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGA 821 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 GACAATGATTGTCAATGCCGGACTGAAAACAGGACACCAAAGTATCTTGGAACTCGTGGA 898 Query 822 TGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGG 881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TGCTGCTATACCAGCTCAGCAATTAGAGCCAATAAGACAAACCATATTACAGGTTGAAGG 958 Query 882 AGTCAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGT 941 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 AGTGAAGGGATGTCATCGGCTAAGGGGTAGGAGAGCTGGTTCATCGTTGTATCTTGATGT 1018 Query 942 ACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTTGCCCATGAGGTAGGAGAATATGT 1001 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 1019 ACACATTGTGGTAGATCCTTTTTCCAGTGTGAGTGTCGCACATGAGGTAGGAGAATATGT 1078 Query 1002 ACGGAGACAGATTAATATGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCC 1061 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 ACGGAGACAGATTAATTTGAACCATCCTGAAGTGTCCGAAGTTTTTATTCATATAGATCC 1138 Query 1062 AGCCTTTTTACAGTTTTCTTGTAGCACGATGGATCATGACAGTATAACGAAAAGTAATCA 1121 ||||||||||||||||||||||||||| | ||||||||||||||||||||| | Sbjct 1139 AGCCTTTTTACAGTTTTCTTGTAGCACCAAGGATCATGACAGTATAACGAA--G------ 1190 Query 1122 AGAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTC 1181 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1191 -GAAAGTAACATCTGCCAAGAGATTAAACATGTTGAAGCCACTGTCTCAGACATTTTTTC 1249 Query 1182 GTCACAGTTATCTGAGAAAATGACGATCAAACGAATTACAACCCACTTGCTGCATAGCAA 1241 ||| ||||| ||||||||| |||||||||||||||||||| |||||||| | |||||||| Sbjct 1250 GTCGCAGTTGTCTGAGAAATTGACGATCAAACGAATTACACCCCACTTGTTACATAGCAA 1309 Query 1242 GATCTTGCTCCAAATCGTAGTCGCCATGCCATCGACCATGACAATACAGGACGTCATGAG 1301 ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| Sbjct 1310 GATCTTGCTCCAAATCGTAGTCGCCATGCCATCAACCATGTCCATACAGGACGTCATGAT 1369 Query 1302 AGCCGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAG 1361 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1370 AGCTGCTGAACATGCAGAGAAAGAGATTCTGAAGGCAGCCCCAAATGTGGCTCGTGTCAG 1429 Query 1362 CATTCAGCTTAGTCTTAACTCCGAATAA 1389 |||||||||||||||||||||||||||| Sbjct 1430 CATTCAGCTTAGTCTTAACTCCGAATAA 1457 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68423342835 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5