BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322443
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT2G48030.1 | Symbols: | DNAse I-like superfamily protein | ch... 1917 0.0
> AT2G48030.1 | Symbols: | DNAse I-like superfamily protein |
chr2:19647523-19650148 REVERSE LENGTH=1788
Length=1788
Score = 1917 bits (1038), Expect = 0.0
Identities = 1255/1351 (93%), Gaps = 50/1351 (4%)
Strand=Plus/Plus
Query 1 ATGTTGAACCTCATTGCTTTCCTCCGCCGTCGTCTCCGCCGCCCCCGGAAAGCCAGAATC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 161 ATGTTGAACCTCATTGCTTTCCTCCGCCGTCGTCTCCGCCGTCCCCGGAAAGCCAGAATC 220
Query 61 TCCGTC-A--ACCACCACCGCTCAGGTGATACTTCTCCGGAGACTCATCATCATCATCAG 117
|||||| | ||||||||| ||||| |||| ||||||| ||||||||||||||||| |
Sbjct 221 TCCGTCAACCACCACCACCTCTCAGTTGATTCTTCTCCTGAGACTCATCATCATCA--A- 277
Query 118 AGTGGTACCAATGGGTTTCCATCGGCAGCCGCTATTCACCCAAACCCGGAGAAAACCATC 177
| ||| | | ||| ||||||||||||| || |||||||||||||| |||||||||
Sbjct 278 AATGG---C--T---TTT-CATCGGCAGCCGCCATCCACCCAAACCCGGACAAAACCATC 328
Query 178 ACAGTGGCCACCTTTAACGCTGCTATGTTCTCCATGGCTCCCGCCGTCCCAAACAACAAG 237
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 329 ACAGTGGCCACCTTTAACGCTGCTATGTTCTCCATGGCTCCCGCCGTCCCTAGCAACAAG 388
Query 238 GGTTTGCCATTCCGGTCCAAGTCAACCGTTGACCGCCCCAAGAGCATTCTCAAGCCCATG 297
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 389 GGCTTGCCATTCCGGTCCAAGTCTACGGTTGACCGCCCCAAGAGCATTCTCAAGCCCATG 448
Query 298 AACGCCGCCGCCA-CTCCTACTCATGACTCCAGAAAACAAGAGAGGTTTGCCAAATCAAG 356
|||||||||| || |||||||||| ||||| ||||| ||| |||||||||||||||| ||
Sbjct 449 AACGCCGCCG-CATCTCCTACTCACGACTCTAGAAAGCAACAGAGGTTTGCCAAATCCAG 507
Query 357 GCCTA-G-G-GTCTCCATCAATCTCCCCGACAACGAGATCAGCCGCCAGCTCAGCTTCCG 413
||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GCCTAGGAGAGTCTCCATCAATCTCCCCGACAACGAGATCAGCCGCCAGCTCAGCTTCCG 567
Query 414 GGAGGATCCACAGCACTCTCCTCTCAGGCCTGCTCTCTCTTTCTCCGGCGAGGTCGGTCT 473
||||||||||||||||||||| |||| | | | |||||||| |||||||
Sbjct 568 GGAGGATCCACAGCACTCTCCCCTCA-G---G----------C-CCGGCGAGATCGGTCT 612
Query 474 CCGGAGCACCAGAACGGCTCTGGAAGTGCTGAGGGAGCTAGACGCAGACGTGCTGGCTCT 533
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 613 CCGGAGCACCAGAACGGCTCTGGAAGTGCTGAGTGAGCTAGACGCAGACGTGCTGGCTCT 672
Query 534 GCAAGACGTCAAGGCTGACGAGGCTGACCAAATGCGACCGCTCTCCGATCTCGCCGCCGC 593
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 673 TCAAGACGTCAAGGCGGACGAGGCTGACCAAATGAGACCGCTCTCCGATCTCGCTGCGGC 732
Query 594 GCTGGGGATGAATTACGTCTTCGCTGAGAGCTGGGCGCCGGAGTACGGCAACGCCATTCT 653
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 733 GCTGGGGATGAATTACGTCTTCGCCGAGAGCTGGGCGCCGGAGTACGGCAACGCCATTCT 792
Query 654 CTCTAAGTGGCCCATCAAAAGCTCCGATGTTCTAAGAATCTTCGACGACACTGATTTCAG 713
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 793 CTCTAAGTGGCCCATCAAAAGCTCCAATGTTCTAAGAATCTTCGACCACACTGATTTCAG 852
Query 714 GAACGTGTTGAAGGCGAGCATAGAGGTTCCGGGGAGCGGGGAAGTGGAGTTTCACTGCAC 773
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 853 GAACGTGTTGAAGGCGAGCATAGAGGTTCCCGGGAGCGGGGAAGTGGAGTTTCACTGCAC 912
Query 774 TCATCTTGATCACTTGGACGAGAAGTGGAGAATGAAGCAAGTCGATGCCATTATCCGATC 833
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 913 TCATCTGGATCACTTGGACGAGAAGTGGAGAATGAAGCAAGTCGATGCCATTATCCAATC 972
Query 834 CACCAACGTACCCCACATTCTCGCTGGTGCTCTCAATTCTCTCGACGAATCCGATTATTC 893
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 973 CACCAACGTACCGCACATACTCGCTGGTGCTCTCAATTCTCTCGACGAATCCGATTATTC 1032
Query 894 TCCTGAGAGATGGACCGACATCGTCAAGTATTACGAAGAGATGGGTAAGCCGATACCAAA 953
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1033 TCCTGAGAGATGGACCGACATCGTCAAGTATTACGAAGAGATGGGTAAGCCAATACCAAA 1092
Query 954 AGCACAAGTGATGAGATTCTTAAAGAGCAAAGAATACACTGACGCTAAGGACTATGCTGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1093 AGCACAAGTGATGAGATTCTTAAAGAGCAAAGAATACACTGACGCTAAGGACTTTGCTGG 1152
Query 1014 AGAATGCGAATCTGTGGTTGTTGTCGCCAAAGGCCAAAGTGTGCAGGGGACATGCAAGTA 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 AGAATGCGAATCTGTGGTTGTTGTCGCCAAAGGCCAAAGTGTGCAGGGGACATGCAAGTA 1212
Query 1074 CGGGACACGCGTGGACTACATACTGGCTTCCTCGGATTCACCGTACCGGTTCGTGCCAGG 1133
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1213 CGGGACACGCGTGGACTACATACTTGCTTCCTCCGATTCACCGTACCGGTTCGTGCCAGG 1272
Query 1134 GTCGTATTCGGTGTTGTCTTCCAAAGGGACCTCGGACCATCACATAGTCAAAGTCGATGT 1193
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1273 GTCGTATTCCGTGTTGTCTTCCAAAGGAACCTCGGACCATCACATAGTCAAAGTCGATGT 1332
Query 1194 TGTAAAAGCTAGAGCGATCAACGTC---GA-C-G-AGCAGCGACCGATAAGA-CACA-A- 1244
||||||||||| | ||||||||||| || | | ||||||||||||||||| |||| |
Sbjct 1333 TGTAAAAGCTACATCGATCAACGTCAACGAGCAGGAGCAGCGACCGATAAGATCACATAA 1392
Query 1245 GCTGCAGAGAGTTACTGCAGCGACGACTACGTATAATAATAACTCGTCTCTCACAAAGGC 1304
|||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1393 GCTGCAGAGAATTAC---AGCGAC---TACGTATAATAATAACTCGTCTCTCACAAAGGC 1446
Query 1305 CTCGTGGAGGACACATTACTATAAAGCGTGA 1335
||||||||||||||| ||||||||||| |||
Sbjct 1447 CTCGTGGAGGACACACTACTATAAAGCATGA 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5