BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322461
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT2G01120.2 | Symbols: ORC4 | origin recognition complex subuni... 1293 0.0
> AT2G01120.2 | Symbols: ORC4 | origin recognition complex subunit
4 | chr2:85416-88181 FORWARD LENGTH=1457
Length=1457
Score = 1293 bits (700), Expect = 0.0
Identities = 831/890 (93%), Gaps = 28/890 (3%)
Strand=Plus/Plus
Query 499 GGAAAGCAGCGGTTGCTATACAGTTTGCT-G--GATGCTATGCAATCTGTAACATCACAA 555
|||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 494 GGAAAGCAGCGGTTGCTATACAGTKTGCTGGACGATGCTATGCAATCTGTAACCTCACAA 553
Query 556 GCTGTTGTCATCGGTATTAGTTCTCGACTGGACGCTGACCAGCTTCTGGAGAAAAGAGTG 615
||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 554 GCTGTTGTCGTCGGTATTAGTTCTCGACTGGACGCCGACCAACTTCTGGAGAAAAGAGTG 613
Query 616 AGATCTCGCTTTTCACACAGAAAAATTCTGTTTCTTCCTCCATCCAGGGACGAACTTGAC 675
|||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||
Sbjct 614 AGATCTCGCTTTTCACACAGAAAATTTTTGTTTCTTCCTCCTTCCAGGGAAGAACTTGAC 673
Query 676 GGTTTGTTGGAACACCTGCTGTCTCTACCAGCAGACTCAAGCTTCCCCAGTGGATATGTT 735
|||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 674 GGTTTGTTTGTACACCTGCTGTCTCTACCAGCAGACTCAGGCTTCCCCAGTGGATATGTT 733
Query 736 TCTCGGTTCAATGATAAGATTAAGAATATAACATCAGACAGGAGATTTAAAGACATACTT 795
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 734 TCTCGGTTCAATGATAAGATTAAGAATTTAACATCAGACACGAGATTTAAAGACATACTT 793
Query 796 AAGACATTTTTTAATGCTCATTCTACTGTGAACAGTTTCTTGAAG-----------T-TT 843
|||||||| ||||||||| |||||||||||||||||||| ||||| | ||
Sbjct 794 AAGACATTGTTTAATGCTAATTCTACTGTGAACAGTTTCCTGAAGTTTATTCTATCTCTT 853
Query 844 -A---T--ATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAG 897
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 GATGTTAGATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAG 913
Query 898 AACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGCTGGAAGCCGTTAGAGAT 957
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 914 AACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGTTGGAAGCCGTTAGAGAT 973
Query 958 TGTTCCGTACTGGAGCTTTATCTTCTGGTATGTATGAGGAGGTTAGAAGTGAAGGAGCAA 1017
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 974 TGTTCCGTACTGGAGCTTTATCTTCTGGTCTGTATGAGGAGGTTAGAAGTGAAGGAGCAA 1033
Query 1018 AGCTCATACAACTTCATTAGTGTAATGAAAGAGTACAAGGCGATACACGATTCTTTTCAA 1077
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1034 AGCTCATACAACTTCATCAGTGTGATGAAAGAGTATAAGGCGATACACGATTCTTTTCAT 1093
Query 1078 ACCTCGGACTACTACGCACAAAATGTCTGCATAAGGGGATTTGAGCACCTGAGAGAGCGA 1137
||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1094 ACCTCAGACTACTACGCACAAAATGTCTGCCTAAGGGCATTTGAGCACCTGAGAGAGCGA 1153
Query 1138 CAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTCC-CAT 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1154 CAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTTTGCA- 1212
Query 1197 GAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCGTGTTGCCC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1213 GAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCTTGTTGCCC 1272
Query 1257 CGTAAGCCATCCTTCTCAAGTTATTGGACCATTGATCTCTCTGTTTTTGTCCCTTGGGAA 1316
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1273 CG----CCATCCTTCTCAAGTTATTGGACCATTGATCTCTGTGTTTTTGTCCCTTGGGAA 1328
Query 1317 TAAGACA-GTCTCTCAAGGTCCTGTGATATGTATGTTTATTTCATGGTAA 1365
||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1329 TAAGACAAGTCTCTCAAGGCCCTGTGATATGTATGTTTATTTCATGGTAA 1378
Score = 723 bits (391), Expect = 0.0
Identities = 440/466 (94%), Gaps = 0/466 (0%)
Strand=Plus/Plus
Query 1 ATGGGCAAAGAGATTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGCGAT 60
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 29 ATGGGCAAAGAGACTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGTGAT 88
Query 61 CCTAGTTTTATCTTCAGACCTCTTTCCGCTTCGTCAGACAGCAATTACAGTAAATTGAAG 120
||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 89 CCTAGTTATGTCTTCAGACCTCTTTCCGCTTCGTCAGATAGCAATTACAGTAAATTGAAG 148
Query 121 TTCATTGTATCAACCTCTATCACGGAGGGATGCAACAATTCCATCTTGCTTCTCGGCCCT 180
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 149 TTCATTGTATCAACCTCTATCACGGAGGGATGCAACAACTCGATGTTGCTTCTCGGCCCT 208
Query 181 CGCGGCTCTGGCAAAACTGCTGTCTTGGATCTCGTTGTAGGTGATTTATTGGAGCAGTTT 240
||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 209 CGCGGCTCTGGCAAAGCTGCTGTCTTGGATCTCGKTSTAGGTGAKTTATTGGAGCAGTTT 268
Query 241 CCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTCTGCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 269 CCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTGTGCC 328
Query 301 TTTAAGGAAATTGCCAGACAGTTGTGCATGGAACACCACCTACTATTCTCCAAGATGGCA 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 329 TTTAAGGAAATTGCCAAACAGTTGTGCATGGAACACCACCTACTATTCTCCAAAATGGCA 388
Query 361 TCATTCGATGAGAATTCGCACTTCATAATAGCCATGTTGCGGGAATGCGGACTAGCACAT 420
||||||||||| ||||| || ||||| |||||||||||||||| ||| ||||||||||||
Sbjct 389 TCATTCGATGACAATTCACAATTCATTATAGCCATGTTGCGGGCATGTGGACTAGCACAT 448
Query 421 AAAACAATCATCTTTGTGCTTGACGAATTTGACATGTTTGCTCAGG 466
|| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 449 AAGACTATCATCTTTGTGCTTGATGAATTTGACATGTTTGCACAGG 494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5