BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg322480 Length=633 Score E Sequences producing significant alignments: (Bits) Value AT2G01340.1 | Symbols: At17.1 | Encodes a protein whose express... 905 0.0 > AT2G01340.1 | Symbols: At17.1 | Encodes a protein whose expression is responsive to nematode infection. | chr2:163954-165290 FORWARD LENGTH=930 Length=930 Score = 905 bits (490), Expect = 0.0 Identities = 599/649 (92%), Gaps = 17/649 (3%) Strand=Plus/Plus Query 1 ATGGGTAATAGTTTAGGCGGCAAGAAAACGACCAAAGTCATGAAGATAGACGGCGAGACT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATGGGTAACAGTTTAGGCGGCAAGAAAACGACCAAAGTCATGAAGATAGACGGCGAGACT 120 Query 61 TTTAAACTGAAAACTCCGGTGACGGCGGAGGAGGTCTTGAAAGACTTTCCCGGCCACGTT 120 |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 121 TTTAAACTGAAAACTCCGGTGACGGCTGAGGAGGTCTTAAAAGACTTTCCCGGCCACGTC 180 Query 121 TTGTTAGACTCTGAATCCGTCAAGCACTACGGTGCCCGAGCCAAACCACTTGAGGCAAAG 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 181 TTGTTAGACTCCGAATCCGTCAAGCACTACGGTGCCCGAGCCAAACCACTTGAGGCGAAG 240 Query 181 CAGAGGTTGGAGGCGAAGCGGCTATATTTCGTGGTGGAGCCGGTGAAAGAGTGTCCACCG 240 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 241 CAGAGGTTGGAGGCGAAGCGGCTTTATTTTGTGGTGGAGCCGGTGAAAGAGTGTCCACCG 300 Query 241 AGAAGGGTAAGATCGGGAATCCACGTGAGTGCCAAGGAGAGGCTTGAGAGCCTCATGCTT 300 |||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| Sbjct 301 AGAAGGGTAAGATCAGGAATTCACGTGAGTGCAAAGGAGAGGCTTGAGAGTCTCATGCTG 360 Query 301 GCCCGGAGATCCTCCTCCGATCTCTCCATACTCAAACCAGCAGGAGGATGGACGACGGAG 360 ||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 GCCCGGAGATCGTCTTCCGATCTCTCCATACTCAAACCACCAGGAGGATGGACGACGGAG 420 Query 361 GAAGAAGAAGGAGCGGTGAGGAGGGTGAAAGTGAGGATTCCCAAGGCGGAGCTTGAAA-G 419 ||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| | Sbjct 421 GAAGAAGAAGGAGCGGTGAGGAGGGTGAAGGTGAGGATTCCCAAAGCTGAGCTTGAAAAG 480 Query 420 ACTCGTCAAGGAAGGAGCCACCGAAGCCGAAGCCACCCAAAAGATCGCTGCTCTCTTTAT 479 ||||| || ||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 481 -CTCGTTAAAGAAGGAGCCACCGAAGCCGAAGCTACGCAGAAGATCGCTGCTCTCTTTAT 539 Query 480 GGCTAAACAGAGGCAAGAGGAGGCACATCAGAACACGCGGGAGGACGAGCCCGCCACCAC 539 ||| ||||||||||||||||||||| |||||||||| || ||||||||||||||||||| Sbjct 540 GGCCAAACAGAGGCAAGAGGAGGCATATCAGAACACACGACAGGACGAGCCCGCCACCAC 599 Query 540 CGTCACTGCC---GCC---------GCCACAAGAGGAGTCAAATCCCGTCTGAAACGAGT 587 | ||| ||| ||| |||||||||||||||||||||||| |||||||||| Sbjct 600 GGCCACCGCCACCGCCACCACCACCGCCACAAGAGGAGTCAAATCCCGTTTGAAACGAGT 659 Query 588 GAGTTTCATGGCGGAAAGAGGAGGA---AGCGAGATCACTGTAGCTTGA 633 ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 660 GAGTTTCATGGCGGAAAGAGGAGGAGGGAGCGAGATCACTGTAGCTTGA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30542361376 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5