BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322865
Length=231
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | c... 361 2e-99
> AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10129610-10132760 REVERSE LENGTH=2424
Length=2424
Score = 361 bits (195), Expect = 2e-99
Identities = 219/231 (95%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 1 ATGACACCGGCAACACTAGCTATATTCTTTGTCTCTTTGGTCATTATTGGAACAGCAACC 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1380 ATGACACCGGCAACACTAGCTATATTCTTTGTCTCTTTGGTTACTATTGGAACAGCAACC 1439
Query 61 GATGTTGCTCCAGCAACCAAACAACCGATTGAGTTCTTTCCGAGTTTGCAGGAGCATGAC 120
||||||||||||||||| ||||||| | |||||||||||||||| |||| ||||||| |
Sbjct 1440 GATGTTGCTCCAGCAACTAAACAACAGTTTGAGTTCTTTCCGAGCTTGCGGGAGCATCAG 1499
Query 121 AAGTCTCTATTTGTTACTGTGGAAGGCTGCAACAACCATTGCCTAACAGCTTGCTTTGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1500 AAGTCTCTATTTGTTACTGTGGAAGGCTGCAACAACCATTGCCTAACAGCTTGCTGTGAC 1559
Query 181 TGCAACATAGAGAAACAGCCTCCCGTTTGCGTTCAGTGTTGCCCGATTTGA 231
||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1560 TGCAACATAGAAAAACAGCCTCCCGTTTGTGTTCAGTGTTGCCCGATTTGA 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10405424043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5