BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323438
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48390.1 | Symbols: | MA3 domain-containing protein | chr3:... 2673 0.0
> AT3G48390.1 | Symbols: | MA3 domain-containing protein | chr3:17920815-17923496
FORWARD LENGTH=2344
Length=2344
Score = 2673 bits (1447), Expect = 0.0
Identities = 1735/1871 (93%), Gaps = 32/1871 (2%)
Strand=Plus/Plus
Query 83 AGTCTCCTCCTCCT-TTTGCTGTAAAGAAAGATGA-G--AAAGATCCTAATTGTGATACT 138
||||||||||| || |||||||| ||||||||||| | ||||||| || ||||||||||
Sbjct 272 AGTCTCCTCCT-CTGTTTGCTGTCAAGAAAGATGATGATAAAGATCATACTTGTGATACT 330
Query 139 GGAGAGGAACCTTATGCACTTGTTGGTTCGCCGGTG-TTAGACCCTTTGGATGATTACAA 197
||||||||||||||||||||||||||||| || ||| ||| |||||||||| ||||||||
Sbjct 331 GGAGAGGAACCTTATGCACTTGTTGGTTCCCCTGTGTTTA-ACCCTTTGGAAGATTACAA 389
Query 198 AAGAAAAGTAGTTTCCATCATCGAAGAATACTTTAGCTCTGGGGATGGGGAAGCGGCTGC 257
|||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||
Sbjct 390 AAGAGAAGTAGTTTCCATCATCGATGAATACTTTAGCTCTGGGGATGTTGAAGTGGCTGC 449
Query 258 TTCTGACCTTATGGATCTTGGTTTGAGTGAATACCATCCTTATTTTGTCAAGAGGCTTGT 317
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 450 TTCTGACCTTATGGATCTTGGTTTGAGCGAATACCATCCTTATTTTGTCAAGAGGCTTGT 509
Query 318 TTCGATGGCCATGGACAGGGGCGATAAGGAGAAGGAGAAGGCTTCGGTGTTGCTCTCGCG 377
||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 510 TTCCATGGCCATGGACAGGGGCAATAAGGAGAAGGAGAAGGCTTCGGTGTTACTCTCGCG 569
Query 378 GTTGTACGCTGATGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTCGA 437
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 570 GTTGTACGCTCTTGTTGTTTCACCTGATCAAATCAGGGTTGGGTTTATTAGACTGCTTGA 629
Query 438 GTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTCCTTGCTTTGTTTAT 497
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 630 GTCCGTTGGTGATCTTGCTTTGGACATACCTGATGCTGTTAATGTACTTGCTTTGTTTAT 689
Query 498 TGCTCGGGCCATCGTCGATGAAATTCTTCCCCCGGTTTTTCTAGCTAGAGCAAAGAAGAC 557
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 690 TGCCCGGGCCATCGTCGATGAAATTCTTCCCCCCGTTTTTCTGGCTAGAGCAAAGAAGAC 749
Query 558 TCTACCGGATTCCTCTGAAGGGTTTCAGGCTATCTTAACTGCAGAAAAGAGCTATCTCTC 617
||||||| |||||||| |||||||||||| ||||||| | ||||||| |||||||||||
Sbjct 750 TCTACCGCATTCCTCTCAAGGGTTTCAGGTTATCTTAGTTTCAGAAAATAGCTATCTCTC 809
Query 618 TGCTCCTCACCACGCAGAGCTAGTGGAGAAAAAATGGGGTGGGAGTACTCACATTACGGT 677
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 810 TGCTCCTCACCACGCAGAGCTAGTGGAGACAAAATGGGGTGGGAGTACTCACATTACGGT 869
Query 678 AGAAAAAACAAAGAGAAAGATATCCGACATTTT-GAAGGAATATGTAGAGAATGGTGACA 736
|||| ||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||
Sbjct 870 AGAAGAAACAAAGAGAAAGATATCTGA-ATTTTTGAATGAATATGTAGAGAATGGTGACA 928
Query 737 CTCGTGAGGCTTGTAGATGCATCAGGGAGTTAGGTGTCCCGTTTTTCCATCACGAGGTTG 796
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 929 CTCGTGAAGCTTGTAGATGCATCAGGGAGTTAGGTGTCTCGTTTTTCCATCACGAGATCG 988
Query 797 TGAAGAGAGGTTTGGTTCTAGTGATGGAGTCTAGAACATCTGAGCCGCTGATACTAAAAC 856
||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 989 TGAAGAGTGGTTTGGTTCTAGTGATGGAGTCCCGAACATCCGAGCCGCTGATACTAAAAT 1048
Query 857 TGTTGAAAGAAGCTTCAGAAGAAGGTCTCATCAGTTCGAGTCAAATGGCGAAAGGGTTCT 916
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1049 TGTTGAAAGAAGCTACAGAAGAAGGTCTCATTAGTTCGAGTCAAATGGCGAAAGGGTTCT 1108
Query 917 CCCGAGTAGCAGAGAGTCTTGATGACCTTTCTCTTGACATCCCATCTGCTAAAACTCTGT 976
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1109 CCCGAGTAGCAGATAGTCTTGATGATCTTTCTCTTGACATCCCATCTGCTAAAACTCTGT 1168
Query 977 TTGAATCAATAGTTCCCAAGGCTATAACCGAAGGTTGGCTCGACGAAGATACATTTAAAG 1036
|||| |||||||||||||||||||||| | ||||||||||||||||||| | |||||||
Sbjct 1169 TTGAGTCAATAGTTCCCAAGGCTATAATAGGAGGTTGGCTCGACGAAGATTCGTTTAAAG 1228
Query 1037 AACGTTCTGATCAAAATGGAGGCTTACCAATTGAAGACGAAAAACTCAGATC--TTACAA 1094
|||| |||||||||||||| ||| | | |||||| || || | || |||
Sbjct 1229 AACGCTCTGATCAAAATGGGGGC--A------G----CGAAAATCTAAGG-CGGTT-CAA 1274
Query 1095 GAAAGATGTGGTA-ACTATAGTTCAGGAGTATTTCCTTTCTGATGACATTCCCGAGCTAA 1153
||| |||| | | || ||| |||| |||||||||||||||||||| || ||||||||||
Sbjct 1275 GAAGGATGCAG-AGACCATAATTCAAGAGTATTTCCTTTCTGATGATATCCCCGAGCTAA 1333
Query 1154 TCCGCAGTCTTGTAGATATAGGATCACCCGAATATAACCTGGTATTTTTGAAGAAACTCA 1213
|||||||||||| |||| |||||| |||||||||||||| |||||| |||||||||||||
Sbjct 1334 TCCGCAGTCTTGAAGATTTAGGATTACCCGAATATAACCCGGTATTCTTGAAGAAACTCA 1393
Query 1214 TCACTCTTGCTATGGATAGGAAGAACAAGGAGAAAGAAATGGTTTCTGTTCTTCTCTCTG 1273
|||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||
Sbjct 1394 TCACTCTTGCTATGGATAGGAAGAACAAAGAGAAAGAAATGGCTTCTGTTTTTCTCGCTT 1453
Query 1274 CTCTTCACATGGAGATGTTCTCAACAAAAGATTTCATAAACGGATTCATCATGCTCCTCG 1333
|||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||
Sbjct 1454 CTCTTCACATGGAGATGTTCTCAACAGAAGACTTCATAAATGGTTTCATCATGCTCCTCG 1513
Query 1334 AATCTGCAGATGACACAGCATTAGATATCTTAGAAGCATCGGACGAGCTTGCTTTGTTTC 1393
|||| ||||| || ||||||||||| ||||||| |||||| |||||||||||| ||||||
Sbjct 1514 AATCCGCAGAAGATACAGCATTAGACATCTTAGCAGCATCAGACGAGCTTGCTCTGTTTC 1573
Query 1394 TAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTTGACGAGATCTCAAACA 1453
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1574 TAGCTAGAGCTGTGATCGATGATGTCTTGGCTCCGCTTAATCTCGAAGAGATCTCAAACA 1633
Query 1454 GCTTACCACCAAAATCAACCGGTTGCGAAACCATCCGCTCAGCTCGGTCACTGATATCCG 1513
||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1634 GCTTACCGCCAAAATCAACCGGAAGCGAAACCATCCGCTCAGCTCGGTCTCTGATATCCG 1693
Query 1514 CTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGCGGAACTGGCTGGGCGGTGG 1573
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1694 CTCGACACGCAGGAGAAAGACTCCTGAGAAGCTGGGGTGGGGGAACGGGCTGGGCAGTGG 1753
Query 1574 AAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAA-TCAGGAGGAGTAATA 1632
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1754 AAGACGCTAAAGACAAGATCTGGAAACTTCTAGAAGAATACGAAGT-AGGAGGAGTAATA 1812
Query 1633 TCAGAGGCTTGTCGATGCATACGCGATCTAGGGATGCCGTTTTTTAACCATGAGGTGGTT 1692
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1813 TCAGAGGCTTGTCGATGCATACGCGATCTAGGAATGCCGTTTTTTAACCACGAGGTGGTT 1872
Query 1693 AAGAAAGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAG 1752
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 AAGAAGGCTTTGGTAATGGCAATGGAGAAGAAGAACGATCGGATGCTTAATCTCTTGCAG 1932
Query 1753 GAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAACC 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1933 GAGTGTTTTGCTGAAGGGATCATTACTACTAACCAAATGACAAAAGGGTTTGGTCGAGTC 1992
Query 1813 AAAGAGAGTCTCGATGACTTATCTTTGGATATTCCAAACGC-GAAAGAGAAATTTAACTC 1871
||||| ||||| |||||||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 1993 AAAGATAGTCTTGATGACTTATCTTTGGATATTCCAAATGCAGAA-GAGAAATTTAACTC 2051
Query 1872 GTATGTTGCGGACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGG-TGTTCTACAGA 1930
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2052 GTATGTTGCGCACGCTGAAGAGAACGGTTGGCTACACCGCGATTTTGGGTGTTCTACAGA 2111
Query 1931 TTCTTGACTGA 1941
|||||||||||
Sbjct 2112 TTCTTGACTGA 2122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96134043675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5