BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg323893
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RR... 1419 0.0
> AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM/RBD/RNP
motifs) family protein with retrovirus zinc finger-like
domain | chr3:19834343-19837088 REVERSE LENGTH=1232
Length=1232
Score = 1419 bits (768), Expect = 0.0
Identities = 827/856 (97%), Gaps = 2/856 (0%)
Strand=Plus/Plus
Query 1 ATGCCTCGCTATGATGATCGCTATGGAAACACTCGCCTCTATGTTGGTCGCTTGTCATCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 164 ATGCCTCGCTATGATGATCGCTATGGAAACACTCGCCTCTATGTTGGTCGCTTATCATCT 223
Query 61 AGAACTCGTACCAGAGACCTTGAACGTCTATTTAGCAGATACGGAAGAGTACGAGATGTG 120
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 224 AGAACTCGTACCAGAGACCTTGAGCGTCTCTTTAGCAGATACGGAAGAGTACGAGATGTG 283
Query 121 GATATGAAGCGTGATTATGCCTTTGTTGAATTTAGTGATCCTCGGGATGCTGATGACGCA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 284 GATATGAAGCGTGATTATGCCTTTGTTGAATTTAGTGATCCTCGTGATGCTGATGACGCA 343
Query 181 AGATATTACCTGGATGGACGGGATTTCGATGGAAGTCGCATCACTGTGGAGGCATCAAGA 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGATATTACTTGGATGGACGGGATTTCGATGGAAGTCGCATCACTGTGGAGGCATCAAGA 403
Query 241 GGGGCGCCTCGTGGTTCTCGGGACAATGGTAGCAGAGGCCCTCCTCCTGGTTCTGGTCGC 300
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 404 GGGGCTCCTCGTGGTTCGCGGGACAATGGTAGCAGAGGCCCACCTCCTGGTTCTGGTCGC 463
Query 301 TGTTTTAATTGTGGTGTTGATGGTCACTGGGCCCGAGACTGCACAGCAGGAGATTGGAAG 360
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 464 TGTTTTAATTGTGGTGTCGATGGCCACTGGGCCCGAGACTGCACAGCAGGAGACTGGAAG 523
Query 361 AATAAATGTTACCGCTGTGGAGAAAGAGGACACATCGAGAGAAACTGCAAGAACAGTCCT 420
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 524 AATAAATGTTACCGCTGTGGTGAAAGAGGACACATTGAGAGAAACTGCAAAAACAGTCCT 583
Query 421 AGTCCAAAGAAGGCCAGGCAGGGTGGAAGCTATTCCAGGTCACCAGTCAAATCCCGCTCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGTCCAAAGAAGGCCAGGCAGGGTGGAAGCTATTCCAGGTCACCAGTCAAATCCCGCTCC 643
Query 481 CCTCGTCGCCGAAGGAGCCCAAGCCGTAGCCGCAGTTACAGTCGAGGTCGCAGCTACAGT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 644 CCTCGTCGCCGAAGGAGCCCAAGCCGTAGCCGTAGTTACAGTCGAGGTCGCAGCTACAGT 703
Query 541 CGATCGCGATCCCCAGTGAGAAGAGAGAAAAGCGTGGAGGACAGATCACGCAGCCCTAAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 704 CGATCGCGATCCCCAGTGAGAAGAGAGAAAAGCGTGGAGGACAGATCACGCAGTCCTAAG 763
Query 601 GCAATGGAGCGATCTTTGTCTCCTAAAGGCAGGGACCAAAGCCTGAGCCCAGACCGAAAA 660
||||||||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 764 GCAATGGAGCGATCTGTATCTCCCAAAGGTAGGGACCAAAGCCTGAGTCCAGACCGAAAA 823
Query 661 GTGATAGATGCGAGCCCAAAGCGTGGATCAGAGTATGATGGTAGCCCAAAAGAGAATGGT 720
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 824 GTGATAGATGCAAGCCCAAAGCGTGGATCAGACTATGATGGTAGCCCAAAAGAGAATGGT 883
Query 721 AATGGCAGGAACTCTGTGAGTCCCATTGTTGGAGGTGATGAAAGTCCTGTTGGACTTAAT 780
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 884 AATGGCAGGAACTCTGCGAGTCCCATTGTTGGAGGTGGTGAAAGTCCTGTTGGACTTAAT 943
Query 781 GGTCAAGACAGGAGTCCC-ATTGATGATGAGGCTGAGCTTAACCGCCCTTCCCCTAAAGG 839
|||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||
Sbjct 944 GGTCAAGACAGGAG-CCCGATTGATGATGAGGCTGAGCTTAGCCGTCCTTCCCCTAAAGG 1002
Query 840 CAGTGAGTCACCTTGA 855
||||||||||||||||
Sbjct 1003 CAGTGAGTCACCTTGA 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5