BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324031
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55010.1 | Symbols: ATPURM, PUR5 | phosphoribosylformylglyci... 1620 0.0
> AT3G55010.1 | Symbols: ATPURM, PUR5 | phosphoribosylformylglycinamidine
cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole
synthetase / AIR synthase (PUR5) | chr3:20386619-20388806
FORWARD LENGTH=1501
Length=1501
Score = 1620 bits (877), Expect = 0.0
Identities = 1083/1180 (92%), Gaps = 23/1180 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCTCGGATTTTGCACTCTTCTTCTTCTTCCTGCTGTTATTCGTCTCTTGACACT 60
|||||| ||||||||||||| |||||||||| | |||||||||||||||| || ||
Sbjct 75 ATGGAAGCTCGGATTTTGCA---GTCTTCTTCTT-C--CTGTTATTCGTCTCTTTACGCT 128
Query 61 GTCAATCGATACCGTTTCCCCTCTGTATCATCACTGAAACCGGTCTCCGTCAGCTTTACT 120
|||||||||| ||| ||| | ||||| ||||| | |||||| |||||||||||||| ||
Sbjct 129 GTCAATCGATCCCGGTTCTCTTCTGTGTCATCTCCGAAACCTTTCTCCGTCAGCTTTGCT 188
Query 121 CAGACGGCGAGAACAAGGACTAAG-GTA-TCT-CGTGT--TTTATCCAT-GTCG-A---A 170
|||||| |||||||||||||| | ||| | | | ||| | || |||| | |
Sbjct 189 CAGACGACGAGAACAAGGACT-CGTGTATTATCCATGTCGAAGAAAGATGGTCGCACTGA 247
Query 171 GAAAGATGATGCCACTGATAGTCTCACTTACAAAGACTCTGGTGTTGATATCGATGCTGG 230
|||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 248 TAAAGATGATGACACTGATAGTCTCAATTACAAAGATTCTGGTGTTGATATCGATGCTGG 307
Query 231 -GACTGAGCTTGTTAAGCGAATCGCAAAGATGGCTCCTGGAATTGGTGGATTCGGTGGTC 289
| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 308 TG-CTGAGCTTGTTAAACGAATCGCAAAGATGGCTCCTGGAATTGGTGGATTTGGTGGTC 366
Query 290 TCTTTCCATTAGGTGATGA-TTATCTCGTAGCTGGTACCGATGGTGTAGGGACTAAATTG 348
||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||
Sbjct 367 TCTTTCCATTAGGTGAT-AGTTATCTTGTAGCTGGTACGGATGGTGTAGGGACTAAATTG 425
Query 349 AAATTGGCATTTGAGACTGGAATTCATGACACCATTGGAATCGACTTGGTTGCTATGAGT 408
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AAATTGGCATTTGAAACTGGAATTCATGACACCATTGGAATCGACTTGGTTGCTATGAGT 485
Query 409 GTGAATGATATTGTTACTTCTGGTGCAAAGCCTCTGTTTTTCCTTGATTACTTTGCTACT 468
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GTGAATGATATTATTACTTCTGGTGCAAAGCCTCTGTTTTTCCTTGATTACTTTGCTACT 545
Query 469 AGTCGTCTTGATGTAGACCTTGCAGAAAAGGTCATTAAAGGGATTGTTGAAGGTTGTCGG 528
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 546 AGTCGTCTTGATGTAGACCTTGCTGAAAAGGTCATTAAAGGGATTGTTGAAGGTTGTCGG 605
Query 529 CAATCGGAATGTGCTCTCTTAGGGGGAGAGACTGCAGAGATGCCTGGCTTTTACGCAGAG 588
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 606 CAATCGGAATGTGCTCTCTTAGGGGGAGAGACTGCAGAGATGCCTGACTTTTATGCAGAG 665
Query 589 GGCGAATACGATCTCAGTGGGTTTGCAGTAGGGATAGTAAAGAAAAATGCTGTTATCAAC 648
||||| |||||||| ||||||||||||||||| ||||||||||||| | | |||||||||
Sbjct 666 GGCGAGTACGATCTAAGTGGGTTTGCAGTAGGCATAGTAAAGAAAACTTCAGTTATCAAC 725
Query 649 GGAAAAAACATTGTTGCTGGAGATGTTCTTATTGGCCTCCCTTCTAGTGGCGTTCATTCC 708
|||||||||||||| || || |||||||||||||||||||| |||||||| |||||||||
Sbjct 726 GGAAAAAACATTGTGGCCGGTGATGTTCTTATTGGCCTCCCGTCTAGTGGTGTTCATTCC 785
Query 709 AATGGTTTCTCTTTAGTAAGAAGGGTATTGGCTCGAAGCAATCTTTCGCTGAATGATGCG 768
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 786 AATGGTTTTTCTCTAGTAAGAAGGGTATTGGCTCGAAGCAATCTTTCGCTGAAGGATGCG 845
Query 769 CTGCCAGGTGGATCAACTACTCTTGGTGAAGCTTTAATGGCACCCACTGTCATTTATGTG 828
|| ||||||||||||| ||| |||||||| ||| |||||||||||||||||||||| |||
Sbjct 846 CTTCCAGGTGGATCAAGTACCCTTGGTGATGCTCTAATGGCACCCACTGTCATTTACGTG 905
Query 829 AAACAGGTACTTGACATAATCAGTAGA-GGAGGAGTGAAGGGGATAGCTCATATAACAGG 887
|||||||||||||| || || || | | ||||||||||| || |||||||||| |||||
Sbjct 906 AAACAGGTACTTGATATGAT-AGAAAAAGGAGGAGTGAAAGGTTTAGCTCATATCACAGG 964
Query 888 CGGAGGTTTCACAGACAACATTCCCCGAGTCTTCCCGGATGGTTTGGGTGCTGTTATTCA 947
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 965 CGGAGGTTTCACAGACAACATTCCCCGAGTCTTCCCGGACGGTTTGGGTGCTGTTATTCA 1024
Query 948 CACCGATGCTTGGGAACTTCCACCGTTGTTCAAGTGGATCCAACAGTCTGGGAGAATAGA 1007
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1025 CACCGATGCTTGGGAACTTCCACCGTTGTTCAAGTGGATTCAACAGACTGGGAGAATAGA 1084
Query 1008 AGACAGGGAGATGAGAAGGACGTTTAACCTGGGGATAGGGATGGTTATGGTGGTTAGTCC 1067
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 AGACAGTGAGATGAGAAGGACGTTTAACCTGGGGATAGGGATGGTTATGGTGGTTAGTCC 1144
Query 1068 AGAGGCGGCTTCACGAATACTACAAGAAGCCAAGAATGGAGACTATGTTGCGTATCGCGT 1127
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1145 AGAGGCAGCTTCACGAATACTAGAAGAAGTCAAGAATGGAGACTATGTTGCGTATCGCGT 1204
Query 1128 AGGAGAGGTTATCAACGGTGAAGGCGTAAGCTATAAGTAG 1167
|||||||||| ||||||||||||||||||||||| |||||
Sbjct 1205 AGGAGAGGTTGTCAACGGTGAAGGCGTAAGCTATCAGTAG 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5