BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324460
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G06630.1 | Symbols: | F-box/RNI-like superfamily protein | ... 313 3e-84
AT3G60040.1 | Symbols: | F-box family protein | chr3:22175937-... 289 5e-77
AT3G59460.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 150 3e-35
> AT1G06630.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:2027739-2031388 FORWARD LENGTH=1745
Length=1745
Score = 313 bits (169), Expect = 3e-84
Identities = 404/513 (79%), Gaps = 33/513 (6%)
Strand=Plus/Plus
Query 41 CAATCAGCTGTCTCCCAGACGAAG-TTTTGGGCAAAATCTTGTCGTTTC-TGCCGACAAA 98
|||||| ||| ||||| |||| || || |||||||||||||||| || | || |||||||
Sbjct 134 CAATCAACTGGCTCCCTGACG-AGATTCTGGGCAAAATCTTGTCATTACTTG-CGACAAA 191
Query 99 ACAGGCTGTATCAACATCTCTTCTCTCGAAAAAGTGGACTTTTATGTATAGATTGGCGGA 158
||||||||| |||||||| |||| || |||||||||| | | | || ||| | |||
Sbjct 192 ACAGGCTGTTTCAACATCGGTTCTTTCTAAAAAGTGGAGGACTCTCTTTAAATTAGTGGA 251
Query 159 TTGTCTTGATTTTGATGATTCCCTCCATCT-GCATGCG-GAA-GAG-GGTGAAC-ATGTA 213
| || || ||||| ||||| | | ||| | ||| | ||| || | || | ||||
Sbjct 252 TACCCTCGAGTTTGACGATTCTGT-C-TCTGGAATGGGTGAACAAGAAGCGAGCTATGTG 309
Query 214 TTTCCAGAGAGCTTCAA-AAACTGTGTGGATCGAACACTGGCTTTGCAATGTGATTATTC 272
||||| |||||||| || | || |||||||||||| | |||||||| ||||||||| |
Sbjct 310 TTTCCGGAGAGCTTTAAGGATTTG-GTGGATCGAACAGTAGCTTTGCAGTGTGATTATCC 368
Query 273 AATCAAGAAATTCTCACTAAAATGCCACATTGG-TGCGCACAG-TG-ACTGTC-AAAGGG 328
|||| ||| || ||||||||||| || |||| | | || | || || | ||| ||
Sbjct 369 GATCAGGAAGTTGTCACTAAAATGTCATGTTGGCAG-GGAC-GATGAAC-AACGAAA-GG 424
Query 329 CTTGTGTGGGACGCTGGATATCTAATGTTGTAGGACGTGGTGTTGT-TGAATTGG-ACCT 386
|||||||||| ||||||||||| ||||| ||||| || |||||| | ||| ||| | ||
Sbjct 425 CTTGTGTGGGCCGCTGGATATCGAATGTCGTAGGGCGCGGTGTT-TCAGAAGTGGTA-CT 482
Query 387 ACA-GAT-AATAGATTGGGGTCTACACTTTATGCCTCCTCAGCTCTTCG-CAAGCAAAAC 443
| | ||| ||| ||| | ||| |||||||| || ||||||||||||| | || |||||||
Sbjct 483 A-AGGATCAAT-GATCGTGGTTTACACTTTCTGTCTCCTCAGCTCTT-GACATGCAAAAC 539
Query 444 GCTGGTTAAGCTGACACTAGGGACAGCG-CTCAACCTTGGAAATCTTCCTTCATATGTGT 502
|||||||||||||||||||| ||| || ||| |||||||| ||||||||||||||||
Sbjct 540 ACTGGTTAAGCTGACACTAGGCACA-CGTCTCTTTCTTGGAAAGCTTCCTTCATATGTGT 598
Query 503 CACTTCCATCTCTTAAGTTTCTCTTCATCGATA 535
||||||||||||||||||||||||||||| |||
Sbjct 599 CACTTCCATCTCTTAAGTTTCTCTTCATCCATA 631
> AT3G60040.1 | Symbols: | F-box family protein | chr3:22175937-22179728
REVERSE LENGTH=2517
Length=2517
Score = 289 bits (156), Expect = 5e-77
Identities = 258/306 (84%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 237 TGTGGATCGAACACTGGCTTTGCAATGTGATTATTCAATCAAGAAATTCTCACTAAAATG 296
|||||||||||| ||||||||||||||||||||| | |||||||| ||||| ||||||||
Sbjct 921 TGTGGATCGAACTCTGGCTTTGCAATGTGATTATCCGATCAAGAATTTCTCTCTAAAATG 980
Query 297 CCACATTGGTGCGCACAG-TGA-CTGTCA-AAGGGCTTGTGTGGGACGCTGGATATCTAA 353
|||| || | | || | ||| | |||| || |||||||| || ||||||||||||||
Sbjct 981 CCACGTTAGCAAGTAC-GATGAGC-GTCAGAA-AGCTTGTGTTGGCCGCTGGATATCTAA 1037
Query 354 TGTTGTAGGACGTGGTGTTGTTGAATTGGACCTACA-GAT-AATAGATTGGGGTCTACAC 411
||| ||||| || |||||| ||||| |||||||| | ||| || |||| ||| |||||
Sbjct 1038 TGTCGTAGGGCGCGGTGTTTTTGAACTGGACCTA-AGGATGAA-AGATCCAGGTATACAC 1095
Query 412 TTTATGCCTCCTCAGCTCTTCGCAAGCAAAACGCTGGTTAAGCTGACACTAGGGACAGC- 470
||| |||||||||| ||| ||||||||||||| |||||||||||||| ||||| ||| |
Sbjct 1096 TTTCTGCCTCCTCATCTCGTCGCAAGCAAAACACTGGTTAAGCTGACGCTAGGCACA-CA 1154
Query 471 GCTCAACCTTGGAAATCTTCCTTCATATGTGTCACTTCCATCTCTTAAGTTTCTCTTCAT 530
|||| |||||| | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1155 GCTCTGTCTTGGACAGCTTCCTTCATATGTGTCACTTCCATCTCTTAAGTCTCTCTTCAT 1214
Query 531 CGATAC 536
|||||
Sbjct 1215 TGATAC 1220
> AT3G59460.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: F-box family protein (TAIR:AT3G60040.1); Has 174 Blast
hits to 172 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 174; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:21977513-21978323
FORWARD LENGTH=321
Length=321
Score = 150 bits (81), Expect = 3e-35
Identities = 193/243 (79%), Gaps = 24/243 (10%)
Strand=Plus/Plus
Query 863 TGGTGATT-TGTCGATGTATTATACATGGACTACTTCTACCCGTGTTCAACAATCTTGTT 921
|||||||| | ||| ||| ||| || ||||||||||||||| ||||||||||||| || |
Sbjct 11 TGGTGATTCT-TCGCTGTGTTAGACGTGGACTACTTCTACCGGTGTTCAACAATC-TGGT 68
Query 922 AA-TTTATCGTTTGGGAGTAAGAGCACTAAACAAGGACGAGGTTGGAAACTGCTGCCACA 980
|| || || |||||||||| || || | || | |||||||||||||||||||||
Sbjct 69 AAGCTTGTCTTTTGGGAGTACGA--AC---A-AA--A-GAGGTTGGAAACTGCTGCCACT 119
Query 981 TCTGCTTAAGCAGTCTCCAAAGCTTGAAACTCTAATCATCCAGGGTTTGGATAGTTACAC 1040
|||| || ||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 120 TCTGATTGAGCAGTCTCCAAAGCTTGAAACTCTAATCATCCAG-------A--GTTACAC 170
Query 1041 AGGGGATGTCTTCATGCCTCTCAA-CCATTTGAAGGTGTTGCATATACTTGGTTATGGAG 1099
||| ||||| |||||||| | ||| ||||| || ||||| | | |||||||||||
Sbjct 171 AGGCGATGTGACCATGCCTC-CGTTCCAAGTGAAGATGCTGCATGTTCATGGTTATGGAG 229
Query 1100 GAA 1102
|||
Sbjct 230 GAA 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5