BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg324943
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648704-651... 835 0.0
AT3G09600.1 | Symbols: | Homeodomain-like superfamily protein ... 237 1e-61
> AT5G02840.1 | Symbols: LCL1 | LHY/CCA1-like 1 | chr5:648704-651972
FORWARD LENGTH=1413
Length=1413
Score = 835 bits (452), Expect = 0.0
Identities = 498/520 (96%), Gaps = 3/520 (1%)
Strand=Plus/Plus
Query 1 ATGACTTCAAGCAATCCGGTGGTCGCCGAAGTAGTACCGTCGGAGAA-TTGTACAGATGC 59
||||| |||| |||||||||||||||||||||| ||||| |||| || || |||||||||
Sbjct 91 ATGACCTCAACCAATCCGGTGGTCGCCGAAGTAATACCGGCGGA-AACTTCTACAGATGC 149
Query 60 TACAGAGACGACGATGGCAACGACGGAAGCTGGGGAAGCACCGGAGAAGAAGGTGAGGAA 119
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 150 TACAGAGACGACGATTGCAACGACGGAAGCTGGTGAAGCACCGGAGAAGAAGGTGAGGAA 209
Query 120 AGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGCGAACACGATAAGTTTCT 179
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 210 AGCTTACACAATCACCAAGTCTAGAGAGAGTTGGACTGAAGGAGAACACGACAAGTTTCT 269
Query 180 GGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GGAAGCTCTTCAATTGTTTGATCGTGACTGGAAAAAGATAGAAGATTTTGTTGGTTCAAA 329
Query 240 GACAGTCATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAGAAAAATGG 299
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 330 GACAGTTATTCAGATCAGGAGCCATGCCCAAAAATACTTTCTAAAGGTCCAAAAAAATGG 389
Query 300 GACTTTAGCACATGTGCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCA 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GACTTTAGCACATGTTCCACCCCCTAGGCCTAAGCGCAAAGCTGCTCATCCATATCCTCA 449
Query 360 AAAGGCATCGAAGAATGCTCAAATGTCGCTACACGTTTCCATGTCCTTTCCTACTCAAAT 419
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 450 AAAGGCATCGAAAAATGCTCAAATGTCGCTTCACGTTTCCATGTCCTTTCCTACTCAAAT 509
Query 420 AAATAACCTGCCTGGATATACTTCATGGGATGATGATACCTCTGCATTGCTAAACATAGC 479
|||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||
Sbjct 510 AAATAACCTGCCTGGATATACTCCATGGGATGATGATACATCTGCATTGTTAAACATTGC 569
Query 480 CGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGA-ACT 518
||||||||||||||||||||||||||||||||||| |||
Sbjct 570 TGTAAGTGGGGTTATTCCACCAGAAGATGAACTTGATACT 609
Score = 577 bits (312), Expect = 8e-164
Identities = 336/348 (97%), Gaps = 0/348 (0%)
Strand=Plus/Plus
Query 583 gttgttgttgGATCAAATGGCATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATTGGA 642
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 625 GTTGATGTTGGATCAAATGACATGATAAGTGAAACTAGTCCTTCAGCATCTGGTATCGGA 684
Query 643 AGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTAAGAGTGGTGAAACAAGCTCCCTCA 702
||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 685 AGCTCAAGCAGAACACTATCAGATTCTAAGGGTTTGAGACTGGCGAAACAAGCTCCCTCA 744
Query 703 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCT 762
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 745 ATGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTGTTCGATCCT 804
Query 763 GACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTT 822
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 805 GACAGCAAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTT 864
Query 823 CTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAACCTGCTTCT 882
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 865 TTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTTGAACCTACTTCT 924
Query 883 GAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTGAGCTCTTAG 930
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 925 GAATATGTTGATGCTGCAGAGGAAGGTCATGAACACTTAAGCTCTTAG 972
> AT3G09600.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:2946406-2948995 FORWARD LENGTH=1402
Length=1402
Score = 237 bits (128), Expect = 1e-61
Identities = 239/291 (82%), Gaps = 14/291 (5%)
Strand=Plus/Plus
Query 590 ttgGATCAAATGGCATGA-TAAGTGAAACTAGTCCTTC-AGCATCTGGTATTGGAAGCTC 647
|||||||||| ||| | | ||| || | ||| ||||| | ||||||| || ||||||||
Sbjct 568 TTGGATCAAAGGGC-TTATTAAATGTTAGTAGCCCTTCTA-CATCTGGCATGGGAAGCTC 625
Query 648 AAGCAGAACACTATCAGATTCTAAGGGTT-TAAGAGTGG-TGAAACAAG-CTCC-CTCAA 703
|||| ||||| |||||| |||| | | || ||||| || | |||| || |||| |
Sbjct 626 AAGCCGAACAGTATCAGGTTCTGA-GATTGTAAGAAAGGCT-AAAC-AGCCTCCAGT-GC 681
Query 704 TGCATGGTCTTCCTGATTTTGCTGAGGTTTATAACTTCATTGGGAGTGTCTTCGATCCTG 763
| || ||| |||||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct 682 TTCACGGTGTTCCTGATTTTGCTGAAGTTTATAATTTCATTGGGAGTGTCTTTGATCCTG 741
Query 764 ACAGC-AAAGGCCGCATGAAAAAGCTCAAGGAAATGGATCCTATAAATTTTGAAACTGTT 822
| | | | ||||| || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 742 A-AACGAGAGGCCATGTGGAAAAGCTCAAGGAAATGGATCCTATAAATTTCGAAACTGTT 800
Query 823 CTGCTGTTGATGAGAAACCTCACAGTGAACTTGTCAAACCCTGACTTCGAA 873
||| | |||||||||||||||||||| ||||| ||||||||||| || |||
Sbjct 801 CTGTTATTGATGAGAAACCTCACAGTTAACTTATCAAACCCTGATTTAGAA 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5