BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325028
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03770.1 | Symbols: KDTA | KDO transferase A | chr5:995160-9... 2102 0.0
> AT5G03770.1 | Symbols: KDTA | KDO transferase A | chr5:995160-997848
FORWARD LENGTH=1601
Length=1601
Score = 2102 bits (1138), Expect = 0.0
Identities = 1259/1319 (95%), Gaps = 2/1319 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCTCGGAGTTTTTGTGTACAGATTATACAGAG-TGTTAACCTACGGTGTCTCCCC 59
|||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 32 ATGAAGCTCGGAGTGTTTGTATACAGATTATACAGAGCT-TTAACCTACGGTGTCTCCCC 90
Query 60 GTTAATTAACCTACACATACGGTGGCGCAGACTCCGGGGACCAGAGCATTGCCGTCGTTG 119
||| ||| |||||||||||||||||||||||||||||||| |||||||| | | |||||
Sbjct 91 GTTGATTCACCTACACATACGGTGGCGCAGACTCCGGGGATTAGAGCATTTCAGCCGTTG 150
Query 120 GCCAGAGCGGTTCGGTCATCCTTCCGCCGTAAGACCGCCGGGTTCACTCGTCTGGTTTCA 179
||| ||||||||||||||||| |||||||||||||| ||||| || || ||||||||||
Sbjct 151 GCCCGAGCGGTTCGGTCATCCCTCCGCCGTAAGACCACCGGGATCGCTTATCTGGTTTCA 210
Query 180 CGCCGTCTCTTTAGGTGAAGGAATGGCTGCGATTCCGGTGATCAGACACTGCAATGAAAC 239
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 211 CGCCGTCTCTTTAGGTGAAGGAATGGCTGCTATTCCGGTGATCAGACACTGCAATGAAGT 270
Query 240 GAAGCCAGATTTGACTATCCTTATGACGACGACGACAGTATCTGCATTTGAAGTAATAAA 299
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 271 AAAGTCAGATTTGACTATCCTAATGACGACGACGACAGTATCTGCATTTGAAGTAATAAA 330
Query 300 GGATCAACTTCCTGTTGGTGTATTACATCAGTTTGCACCACTGGATACACCGGTGGCTAT 359
| |||| || ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 331 GAATCAGCTCCCTGTTGGTGTATTACATCAGTTTGCACCACTGGATACACCTTTAGCTAT 390
Query 360 CGACAGATTCCTTGGCCATTGGAAACCGAATGCGATTGTCATAATGGAGAATGAACTCTG 419
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 391 TGACAGATTCCTTGGCCATTGGAAACCGAATGCGATTATCATAATGGAGAACGAACTCTG 450
Query 420 GCCTAATCTCATCATGGCTGCTTCGGGACTTCTAATTCCGTTGGCAATGTTGAACGCTCG 479
||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 451 GCCTAATCTTATCATGGCTGCTTCAGGACTTCTAATTCCGTTGGGATTGTTGAACGCTCG 510
Query 480 GATGTCTACTAAATCCTTTAAACGGTGGTCTAGTCCGCTCTTACTACCGCTGGTATCGTT 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 511 GATGTCTACTAAATCCTTTAAACGGTGGTCGAGTCCGCTCTTACTACCGCTGGTATCGTT 570
Query 540 GTTGCTATCTAAATTCTCATTGATAGCACCTCTGAGCACCCTGCAGGGTTTACATTTCCA 599
||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||| ||
Sbjct 571 GTTGCTATCTAAATTCTCATTGATAGCCCCACTGAGCACCCTGCAGGGTATACGTTTTCA 630
Query 600 GCTGCTGCATGCGCCACCCTTTGTCATAAATTATTCTGGTGACTTAAAATACGTGGTAAA 659
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GTTGCTGCATGCGCCACCCTTTGTCATAAATTATTCTGGTGACTTAAAATACGTGGTAAA 690
Query 660 CAAGTTCCGTGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCTC 719
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 691 CAAGTTCCATGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCGC 750
Query 720 AGAAATGAAAGTCTGGATTGCATCTTCTTTACATAGAGGCGAAGAAGAAGTCATTTTAGG 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 751 AGAAATGAAAGTCTGGATTGCATCTTCATTACATAGAGGCGAAGAAGAAGTCATTTTAGG 810
Query 780 AGTTCACAACATGCTTCTCGAATCACATCCGGACTCTGTTGTCATAATTGTGCCTCGACA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 AGTTCACAACATGCTTCTCGAATCACATCCGGACTCTGTTGTCATAATTGTGCCTCGACA 870
Query 840 TCCACATCATGGCCAACAGATTGCTCATAAACTGCGGAAAGATGGCCAAAGTGTTGCTCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 TCCACATCATGGCCAACAGATTGCTCATAAACTGCGGAAAGATGGCCAAAGTGTTGCTCT 930
Query 900 AAGGTCTCAAAATGAAAAGCTTACATCAAGGAAGACGAATATATATGTGGTGGATACACT 959
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 931 AAGGTCTCAAAACGAAAAGCTTACACCAAGGAAGACGAATATATATGTGGTGGATACACT 990
Query 960 AGGTGAACTAAGAGAATTGTACAGTGTAGCTCCAATAGCCGTCATTGGAGGCTCTTTCAT 1019
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 991 AGGTGAACTAAGGGAATTGTACAGTGTCGCTCCAATAGCCGTCATTGGAGGCTCTTTCAT 1050
Query 1020 CCCAGGATTAACTGGTCACAACTTGTCTGAAGCAGCTGCTGCTGGCTGTGCCGTTATTAC 1079
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1051 CCCGGGCTTAACTGGTCACAACTTGTCTGAAGCAGCTGCTGCTGGCTGCGCCGTTATTAC 1110
Query 1080 AGGTTGTCATGTTGGGCATTTCTCTCACATGGTGAAGGCGATGCAGCAGTCGAATCCCTT 1139
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1111 AGGTTGTCATGTTGGGCATTTCTCTCACATGGTGAAGGCGATGCAGCAGGCGAACCCCTT 1170
Query 1140 ATCGGTGACACAGGTCTCGACAAAACTAGAGCTCAAAGAAGCTGTAGACTTGCTCCTGAG 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1171 ATCGGTGACACAGGTCTCGACAAAACTAGAGCTCAAAGAAGCTGTCGACTTGCTCCTGAG 1230
Query 1200 TAACCCTGAGATCTTGGAAACACAGCAGAGAGCTTCTAAAGAAGTTTATGAATCTCTATC 1259
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1231 TAACCCTGAGATCTTGGAAACACATCAGAGAGCTTCTAAAGACGTTTATGAATCTCTATC 1290
Query 1260 AAGCTGCATTATCACTAACATCTGGAATCTTCTCAATCTTCATATCTTTAGAGGGAAAT 1318
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1291 AAGCTGCATTATCACTAACATCTGGAAACTTCTCAATCTTCATATCTTTAGAGGGAAAT 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5