BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325294

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06760.1 | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5...   688    0.0  


> AT5G06760.1 | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5 
| chr5:2089492-2090430 REVERSE LENGTH=856
Length=856

 Score =  688 bits (372),  Expect = 0.0
 Identities = 446/480 (93%), Gaps = 12/480 (3%)
 Strand=Plus/Plus

Query  1    ATGCAGTCGATGAAAGAAACAGCTTCGAATATTTCAGCTTCTGCAAAATCTGGCATGGAC  60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  118  ATGCAGTCGATGAAAGAAACAGCTTCGAATATTGCAGCTTCTGCAAAATCTGGCATGGAC  177

Query  61   AAAACCAAAGCTACCTTGGAGGAAAAGGCTGAGAAGATGACGACACGAGACCCTGTTCAG  120
            ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct  178  AAAACCAAAGCTACCTTGGAGGAAAAGGCGGAGAAGATGAAGACACGAGACCCTGTTCAG  237

Query  121  AAACGGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCCGAGATGCAGAAGAGA  180
            |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  238  AAACAGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCTGAGATGCAGAAGAGA  297

Query  181  GAAACGCGTGAGTACAACGCGGCCAGGAAAGAAGCGGCTGGAGCTGGAACCGGTTTAGGT  240
            ||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct  298  GAAACGCGTCAGCACAACGCGGCCATGAAAGAAGCGGCTGGAGCCGGAACCGGTTTAGGT  357

Query  241  TTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACACCAG  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  358  TTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACATCAG  417

Query  301  ATGTCGGCTTTGCCTGGTCACGGAACAGGACAACTGACAGACCGGGTTGTGGAGGGTACG  360
            ||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| |||
Sbjct  418  ATGTCGGCTCTGCCTGGTCACGGAACGGGACAACTGACCGACCGCGTTGTGGAGGGCACG  477

Query  361  GCTGTGACCGACCCGATCGGAAGGAACACTGGAAATGGTCGGACAACAACTGCTCATAAC  420
            ||||||||||||||||| |||||||||||||||| ||||||||||||  | |||||||||
Sbjct  478  GCTGTGACCGACCCGATTGGAAGGAACACTGGAACTGGTCGGACAAC--C-GCTCATAAC  534

Query  421  ACCCACGTCGGTCCTGGT----CC---G--TACGGAACCGGCGGGGGATATAGTGGATAA  471
            || ||||| |||  ||||    ||   |  |||||||||||||||||||||| |||||||
Sbjct  535  ACTCACGTTGGTGGTGGTGGTGCCACCGGGTACGGAACCGGCGGGGGATATACTGGATAA  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5