BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325294 Length=471 Score E Sequences producing significant alignments: (Bits) Value AT5G06760.1 | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5... 688 0.0 > AT5G06760.1 | Symbols: LEA4-5 | Late Embryogenesis Abundant 4-5 | chr5:2089492-2090430 REVERSE LENGTH=856 Length=856 Score = 688 bits (372), Expect = 0.0 Identities = 446/480 (93%), Gaps = 12/480 (3%) Strand=Plus/Plus Query 1 ATGCAGTCGATGAAAGAAACAGCTTCGAATATTTCAGCTTCTGCAAAATCTGGCATGGAC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 118 ATGCAGTCGATGAAAGAAACAGCTTCGAATATTGCAGCTTCTGCAAAATCTGGCATGGAC 177 Query 61 AAAACCAAAGCTACCTTGGAGGAAAAGGCTGAGAAGATGACGACACGAGACCCTGTTCAG 120 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| Sbjct 178 AAAACCAAAGCTACCTTGGAGGAAAAGGCGGAGAAGATGAAGACACGAGACCCTGTTCAG 237 Query 121 AAACGGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCCGAGATGCAGAAGAGA 180 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 238 AAACAGATGGCTACACAGGTTAAAGAAGATAAGATCAATCAAGCTGAGATGCAGAAGAGA 297 Query 181 GAAACGCGTGAGTACAACGCGGCCAGGAAAGAAGCGGCTGGAGCTGGAACCGGTTTAGGT 240 ||||||||| || |||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 298 GAAACGCGTCAGCACAACGCGGCCATGAAAGAAGCGGCTGGAGCCGGAACCGGTTTAGGT 357 Query 241 TTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACACCAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 358 TTGGGGACGGCCACTCACTCGACCACTGGACAAGTCGGACACGGCACTGGGACACATCAG 417 Query 301 ATGTCGGCTTTGCCTGGTCACGGAACAGGACAACTGACAGACCGGGTTGTGGAGGGTACG 360 ||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||| ||| Sbjct 418 ATGTCGGCTCTGCCTGGTCACGGAACGGGACAACTGACCGACCGCGTTGTGGAGGGCACG 477 Query 361 GCTGTGACCGACCCGATCGGAAGGAACACTGGAAATGGTCGGACAACAACTGCTCATAAC 420 ||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||| Sbjct 478 GCTGTGACCGACCCGATTGGAAGGAACACTGGAACTGGTCGGACAAC--C-GCTCATAAC 534 Query 421 ACCCACGTCGGTCCTGGT----CC---G--TACGGAACCGGCGGGGGATATAGTGGATAA 471 || ||||| ||| |||| || | |||||||||||||||||||||| ||||||| Sbjct 535 ACTCACGTTGGTGGTGGTGGTGCCACCGGGTACGGAACCGGCGGGGGATATACTGGATAA 594 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22404429562 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5