BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg325325

Length=948
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07100.1 | Symbols: WRKY26 | WRKY DNA-binding protein 26 | c...   992    0.0  
  AT4G39410.1 | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding prot...  75.0    1e-12


> AT5G07100.1 | Symbols: WRKY26 | WRKY DNA-binding protein 26 | 
chr5:2204248-2205811 FORWARD LENGTH=1159
Length=1159

 Score =  992 bits (537),  Expect = 0.0
 Identities = 609/645 (94%), Gaps = 0/645 (0%)
 Strand=Plus/Plus

Query  287  ACACATCTCCTCCATTGTCCCTACCATCTATGGTAACTCAGTCTTTACCCCAACTGGATG  346
            ||||| ||||||| |||| |||||||||||||||||||||| ||||||| ||||||||| 
Sbjct  316  ACACAACTCCTCCCTTGTTCCTACCATCTATGGTAACTCAGCCTTTACCTCAACTGGATT  375

Query  347  TATCCAAATCTGAAATCATGTCAAGGAACAAAACCTCTGATGACGGCTACAATTGGCGCA  406
            ||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct  376  TATTCAAATCCGAAATCATGTCGAGTAACAAAACCTCTGATGACGGCTACAATTGGCGCA  435

Query  407  AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT  466
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  436  AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT  495

Query  467  ATCCAAATTGTCTCACAAAGAAGAAAGTGGAGACGTCACTTGTGAAGGGTCAGATCACAG  526
            |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |  |
Sbjct  496  ATCCAAATTGTCTCACAAAGAAGAAAGTAGAGACGTCTCTTGTGAAGGGTCAGATGATTG  555

Query  527  AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACTAAGAGATCATCTT  586
            |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct  556  AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACGAAGCGATCATCTT  615

Query  587  CCACCACTGCAGCAGCGCAACAAAACAGCAGTCATGGAGACGGTAAAGACATTGGTGAAG  646
            ||||| ||  |||||| || || ||||||||| |||||||||||||||||||||||||||
Sbjct  616  CCACCGCTATAGCAGCACATCAGAACAGCAGTAATGGAGACGGTAAAGACATTGGTGAAG  675

Query  647  ATGAAGCAGACGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTAGTGG  706
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  676  ATGAAACAGAGGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTGGTGG  735

Query  707  TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGCC  766
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  736  TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGTC  795

Query  767  AGAAAGTTGTCAAGGGTAATCCCAATCCAAGGAGCTATTACAAGTGCACATTTACTGGAT  826
            ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct  796  AGAAAGTCGTCAAGGGTAATCCAAATCCAAGGAGCTATTACAAGTGCACATTTACAGGAT  855

Query  827  GTTGTGTAAGGAAACACGTTGAGAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT  886
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  856  GTTTTGTAAGGAAACACGTTGAAAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT  915

Query  887  ACGAAGGAAAACATAAACACCAAATCCCGACTCCAAAAAGAGGTC  931
            ||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct  916  ACGAAGGAAAACACAAACACCAAATCCCGACCCCAAGAAGAGGTC  960


 Score =  359 bits (194),  Expect = 3e-98
 Identities = 230/248 (93%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCTCTTTCGATCGCCAAAGAGCTGTCCCGAAATTCAAAACAGCAACTCCATCGCCG  60
            ||||||||||| ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct  66   ATGGGCTCTTTTGATCGCCAAAGAGCTGTTCCGAAATTCAAAACAGCAACACCGTCACCG  125

Query  61   CTCCCTCTCTCTCCTTCGCCATACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT  120
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  126  CTCCCTCTTTCTCCTTCGCCTTACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT  185

Query  121  CTCGACTCACCTCTTCTCTTCACTTCCTCTAATATTTTGCCGTCTCCAACGACAGGCACA  180
            |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct  186  CTCGACTCTCCTCTTCTCTTCACTTCCTCCAACATTTTGCCGTCTCCTACGACAGGCACA  245

Query  181  TTTCCGGCGCAATCTCTGAACTGGAAGAACAACGGTTTGCTCATTGACCAGAATGAAATC  240
            ||||| ||||||||||||||||  || || |||||||||||||||||| | |||||||||
Sbjct  246  TTTCCAGCGCAATCTCTGAACTATAACAATAACGGTTTGCTCATTGACAAAAATGAAATC  305

Query  241  AAATATGA  248
            ||||||||
Sbjct  306  AAATATGA  313


> AT4G39410.1 | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding protein 
13 | chr4:18332878-18334789 REVERSE LENGTH=974
Length=974

 Score = 75.0 bits (40),  Expect = 1e-12
 Identities = 74/89 (83%), Gaps = 7/89 (8%)
 Strand=Plus/Plus

Query  732  TCTT-GACGATGGCTACAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAGGGTAATCCCA  790
            |||| || ||||| || ||||||||||||||||||||||||||||||||    |  ||||
Sbjct  662  TCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACA--CCCA  719

Query  791  A--TCCAAGGAGCTATTACA-AGTGCACA  816
            |  ||| ||||||||||||| | ||||||
Sbjct  720  ACATCCCAGGAGCTATTACAGA-TGCACA  747



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46366117681


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5