BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg325325
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07100.1 | Symbols: WRKY26 | WRKY DNA-binding protein 26 | c... 992 0.0
AT4G39410.1 | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding prot... 75.0 1e-12
> AT5G07100.1 | Symbols: WRKY26 | WRKY DNA-binding protein 26 |
chr5:2204248-2205811 FORWARD LENGTH=1159
Length=1159
Score = 992 bits (537), Expect = 0.0
Identities = 609/645 (94%), Gaps = 0/645 (0%)
Strand=Plus/Plus
Query 287 ACACATCTCCTCCATTGTCCCTACCATCTATGGTAACTCAGTCTTTACCCCAACTGGATG 346
||||| ||||||| |||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 316 ACACAACTCCTCCCTTGTTCCTACCATCTATGGTAACTCAGCCTTTACCTCAACTGGATT 375
Query 347 TATCCAAATCTGAAATCATGTCAAGGAACAAAACCTCTGATGACGGCTACAATTGGCGCA 406
||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 376 TATTCAAATCCGAAATCATGTCGAGTAACAAAACCTCTGATGACGGCTACAATTGGCGCA 435
Query 407 AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AATACGGGCAGAAGCAAGTCAAAGGAAGCGAAAACCCGAGGAGTTACTTCAAATGCACGT 495
Query 467 ATCCAAATTGTCTCACAAAGAAGAAAGTGGAGACGTCACTTGTGAAGGGTCAGATCACAG 526
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | |
Sbjct 496 ATCCAAATTGTCTCACAAAGAAGAAAGTAGAGACGTCTCTTGTGAAGGGTCAGATGATTG 555
Query 527 AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACTAAGAGATCATCTT 586
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 556 AGATTGTCTATAAAGGAAGCCACAATCATCCCAAGCCCCAATCCACGAAGCGATCATCTT 615
Query 587 CCACCACTGCAGCAGCGCAACAAAACAGCAGTCATGGAGACGGTAAAGACATTGGTGAAG 646
||||| || |||||| || || ||||||||| |||||||||||||||||||||||||||
Sbjct 616 CCACCGCTATAGCAGCACATCAGAACAGCAGTAATGGAGACGGTAAAGACATTGGTGAAG 675
Query 647 ATGAAGCAGACGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTAGTGG 706
||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 676 ATGAAACAGAGGCCAAGAGATGGAAAAGAGAAGAGAATGTGAAGGAGCCAAGAGTGGTGG 735
Query 707 TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGCC 766
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 736 TTCAGACAACAAGTGATATAGACATTCTTGACGATGGCTACAGATGGAGAAAGTATGGTC 795
Query 767 AGAAAGTTGTCAAGGGTAATCCCAATCCAAGGAGCTATTACAAGTGCACATTTACTGGAT 826
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 796 AGAAAGTCGTCAAGGGTAATCCAAATCCAAGGAGCTATTACAAGTGCACATTTACAGGAT 855
Query 827 GTTGTGTAAGGAAACACGTTGAGAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT 886
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 856 GTTTTGTAAGGAAACACGTTGAAAGAGCATTTCAAGATCCCAAGTCAGTGATCACAACTT 915
Query 887 ACGAAGGAAAACATAAACACCAAATCCCGACTCCAAAAAGAGGTC 931
||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct 916 ACGAAGGAAAACACAAACACCAAATCCCGACCCCAAGAAGAGGTC 960
Score = 359 bits (194), Expect = 3e-98
Identities = 230/248 (93%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 1 ATGGGCTCTTTCGATCGCCAAAGAGCTGTCCCGAAATTCAAAACAGCAACTCCATCGCCG 60
||||||||||| ||||||||||||||||| |||||||||||||||||||| || || |||
Sbjct 66 ATGGGCTCTTTTGATCGCCAAAGAGCTGTTCCGAAATTCAAAACAGCAACACCGTCACCG 125
Query 61 CTCCCTCTCTCTCCTTCGCCATACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT 120
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 CTCCCTCTTTCTCCTTCGCCTTACTTCACTATGCCTCCTGGCCTTACTCCCGCCGACTTT 185
Query 121 CTCGACTCACCTCTTCTCTTCACTTCCTCTAATATTTTGCCGTCTCCAACGACAGGCACA 180
|||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 186 CTCGACTCTCCTCTTCTCTTCACTTCCTCCAACATTTTGCCGTCTCCTACGACAGGCACA 245
Query 181 TTTCCGGCGCAATCTCTGAACTGGAAGAACAACGGTTTGCTCATTGACCAGAATGAAATC 240
||||| |||||||||||||||| || || |||||||||||||||||| | |||||||||
Sbjct 246 TTTCCAGCGCAATCTCTGAACTATAACAATAACGGTTTGCTCATTGACAAAAATGAAATC 305
Query 241 AAATATGA 248
||||||||
Sbjct 306 AAATATGA 313
> AT4G39410.1 | Symbols: WRKY13, ATWRKY13 | WRKY DNA-binding protein
13 | chr4:18332878-18334789 REVERSE LENGTH=974
Length=974
Score = 75.0 bits (40), Expect = 1e-12
Identities = 74/89 (83%), Gaps = 7/89 (8%)
Strand=Plus/Plus
Query 732 TCTT-GACGATGGCTACAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAGGGTAATCCCA 790
|||| || ||||| || |||||||||||||||||||||||||||||||| | ||||
Sbjct 662 TCTTAGATGATGGATATAGATGGAGAAAGTATGGCCAGAAAGTTGTCAAAAACA--CCCA 719
Query 791 A--TCCAAGGAGCTATTACA-AGTGCACA 816
| ||| ||||||||||||| | ||||||
Sbjct 720 ACATCCCAGGAGCTATTACAGA-TGCACA 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5