BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325480 Length=654 Score E Sequences producing significant alignments: (Bits) Value AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-assoc... 1088 0.0 AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:255... 516 1e-145 > AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-associated protein 20.2 | chr5:2876753-2878700 FORWARD LENGTH=1040 Length=1040 Score = 1088 bits (589), Expect = 0.0 Identities = 633/654 (97%), Gaps = 3/654 (0%) Strand=Plus/Plus Query 1 ATGGGGAATTTGTTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTTTCT 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 45 ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT 104 Query 61 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA 164 Query 121 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 165 GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGTTA 224 Query 181 GCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 240 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 225 GCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCATC 284 Query 241 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAGCAGTCTTTGAG 300 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 285 AATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAAAAAGCAGTCTTTGAG 344 Query 301 AGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGATGAT 360 |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| Sbjct 345 AGCTTAAAGCAAGGTAACAATGCAATTAAGGCGATTCAGAGCGAGGTCAACCTTGATGAT 404 Query 361 GTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGATGAACTGAGTGCC 420 ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 405 GTTCAAAAACTGATGGATGACACTGCCGAGGCCAAGGCTTATCAGGATGAACTGAGTGCC 464 Query 421 ATATTAGGTGAGAAACTATCAGCAGAAGATGAAGAAGATATCTTAGCAGAATTCGACAAC 480 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 465 ATATTAGGTGAGAAACTATCAGCGGAAGATGAAGAAGAGATCTTAGCAGAATTCGACAAC 524 Query 481 CTAGAAAGTCAGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTTGTGCCT 540 |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 525 CTAGAAAGTCTGCTGATTGTTGAAGATATGCCTGAAGTGCCTACGACAGAGCTCATGCCT 584 Query 541 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 585 GAAGAACCCGAGAAAATGGATCTCCCTGATGTGCCAACAAAAGCACCAGTCGCTTCCAAT 644 Query 601 GCAGAAATCACTCCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 654 | | || |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 645 G-A-AAC-CACTTCAACAAAGAGAAAAGTTCTTGAAGAACCTTTGGAAGCTTGA 695 > AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:25563724-25565434 FORWARD LENGTH=1074 Length=1074 Score = 516 bits (279), Expect = 1e-145 Identities = 368/411 (90%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 1 ATGGGGAATTTGTTCGTGAAGAAACCGA-AGATCACGGAGGTTGATCGAGCGATTCTTTC 59 |||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || Sbjct 167 ATGGGGAATTTGTTCGTGAAGAAACC-ACAGATCACGGAGGTTGATCGAGCGATTCTCTC 225 Query 60 TCTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCA-ACAGCTTGAGAAAGTAATTG 118 ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 226 TCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGA-AGCTTGAGAAAGTAATTG 284 Query 119 AAGCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTTGT 178 |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 285 AAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCGAAAGGACAGAGCTTTGT 344 Query 179 TAGCATTGAAGAAGAAGCGGACACAAGAAGAGTTGTTGAAGCAAGTAGATCAGTGGCTCA 238 ||||||||| |||||| || || ||||||||||| ||||||||||| ||||| ||| ||| Sbjct 345 TAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAAGCAAGTGGATCAATGGGTCA 404 Query 239 TCAATGTCGAACAACAATTGGCAGATATCGAACTTACAAGCAAGCAGAAAG-CAGTCTTT 297 ||||||| ||||||||||| ||||||| |||||||| ||||| || |||| |||| ||| Sbjct 405 TCAATGTTGAACAACAATTAACAGATATTGAACTTACGAGCAAACA-AAAGGCAGTGTTT 463 Query 298 GAGAGCTTAAAGCAAGGTAGCAGTGCAATTAAGGCGATTCAGAGTGAGGTCAACCTTGAT 357 |||||||||||||| |||| ||||| |||||||| ||||| || || | |||||||| Sbjct 464 GAGAGCTTAAAGCAGGGTAATAGTGCTATTAAGGCCATTCAAAGCGAATTGGACCTTGAT 523 Query 358 GATGTTCAAAAACTAATGGATGACACTGCTGAGGCCAAGGCTTACCAGGAT 408 ||||||||||||||||||||||| |||||||| || || ||||| || ||| Sbjct 524 GATGTTCAAAAACTAATGGATGATACTGCTGATGCTAAAGCTTATCAAGAT 574 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31597278463 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5