BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg325766 Length=1956 Score E Sequences producing significant alignments: (Bits) Value AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 2983 0.0 > AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein with RNA-binding domain | chr5:4035294-4038795 REVERSE LENGTH=2573 Length=2573 Score = 2983 bits (1615), Expect = 0.0 Identities = 1849/1962 (94%), Gaps = 15/1962 (1%) Strand=Plus/Plus Query 1 ATGGATTCCGGTGACGCGACAGCTTTGCTTTTGGCGAAAATCCGAAGCTTGGAGCCAGAT 60 ||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||| Sbjct 192 ATGGATTCCGGTGACGCGACATCTTTGCTTTTGACGAAAATTCGAAGCTTGGAGCCAGAT 251 Query 61 TATGCTCCGAAGATTATTGGGTATTTGCTTTTACAGGATTTTGGTGATAGAGACTTGATG 120 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 252 TATGCTCCTAAGATTATTGGGTATTTGCTTTTACATGATTTTGGTGATAGAGACTTGATG 311 Query 121 CATCTGGCTCGTGGACCTGAATCGATTTTGCAGTCGATTATTTCGAAAGTGAAGAGTCAT 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 312 CATCTGGCTCGTGGACCTGAATCGATTTTGCAGTCGACTATTTCGAAAGTGAAGAGTC-T 370 Query 181 -TTGGGAATTTTCTCGAACAACTCGCCTTCTTCTACTCCGACGTCTCCTTCTCCGTTGAA 239 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 371 CTTGGGGATTTTCTCCAACAACTCGCCTTCTTCTACTCCGACGTCTCCTTCTCCGTTGAA 430 Query 240 CCCTATCTCTCGACCACCTATTAACGGTAGAGGAAGCTCTCACTCTAATGGGTTTATGGA 299 ||||||| ||| || ||| ||||||| ||||||||||||||||| |||||||||||||| Sbjct 431 TCCTATCTGTCGTCCTCCTCTTAACGGAAGAGGAAGCTCTCACTCCAATGGGTTTATGGA 490 Query 300 TTTCCGTAGAAACTCTCCATCTTCTCCTTCTTCTACCTCTCCTTGGTCACTCAACAACTC 359 |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 491 TTTCCGTAGAAACTCTCCGTCTTCTCCTTCTTCTACCTCTCCTTGGTCATTCAACAACTG 550 Query 360 TATGAACCCTATTAATGGGAATAACCCCCACATTTCCCCCAAACACACTCCGATCTCGAA 419 ||| ||| || ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 551 TATCAACGGTAATAATGGGAATAACCCCCACATTTCCCCTAAACACACTCCGATCTCGAA 610 Query 420 ACCCTTTAGCTCTCACCAAAGCAATGGAGTTTCTGCTACAGATTCTGGTAGTGCTGACGC 479 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 611 ACCCTTTAGCTCTCACCAAAGCAATGGACTTTCTGCTACACATTCTGGTAGTGCTGACGC 670 Query 480 TGGTGGTAATGCTGATTTACTGGATGACCAGCAGCTTAATGATTACCTTTCTTTTCTCGA 539 || |||| |||||||||||| ||||| |||||||||||||||| |||||| |||||||| Sbjct 671 TGCTGGTGGTGCTGATTTACTTGATGATCAGCAGCTTAATGATTGCCTTTCGTTTCTCGA 730 Query 540 CGATTCCTGTTCAAAAACCGAGGATCTTGTGGATCCTAGGATTCCTTTGGACTACTCTGT 599 |||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 731 CGATTCTTGTTCTAAAACCGAGGATCTTGTGGATCCTAGCATTCCTTTGGATTACTCTGT 790 Query 600 AGA---CGATGGAGAAACCCATCTGCACAGGAGGAGTTTCTC-GGCAGATGCGTCTTTTG 655 ||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 791 AGATGGTGATGGTGAAACCCATCTGCACAGGAGGAGTTTCTCTTG-TGATGCGTCTTTTG 849 Query 656 GGTCCGGAGATGATGGATTTGGTTCTGGATGCAAACCATGTGTGTATTTTAGTCGAGGTT 715 |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 850 TGTCCGGAGATGATGGATTTGGTGGTGGATGCAAACCATGTGTGTATTTTAGTAGAGGTT 909 Query 716 TGTGCAAGAACGGAGAAAGCTGCAAGTTTATCCACGGCGGATATCCGGAGAATATGGATG 775 |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 910 TGTGCAAGAATGGAGAAAGCTGCAAGTTTATCCACGGTGGATATCCGGATAATATGGATG 969 Query 776 GTAATGGCATTGTCGCTGACTCGCCTAGGAAAATGGAGAACTTTGTTAGGCAGCACCAGG 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 970 GTAATGGCATTGTCGCTGACTCGCCTAGGAAAATGGAGAACTTTGTTAGGCAGCACGAGG 1029 Query 836 AGATGATGAGGTTGAAATTGGCTTACCAGCAGCAGAGGCTGACTTCTCAAATCCTGGGTA 895 ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1030 AGATGATGAGGCTGAAATTGGCTTACCAGCAGCAGAGGTTGGCTTCTCAAATCCTGGGTC 1089 Query 896 GGGCTCCCCAGTTGCCATACGAGAAAAGAATGGATTTTCTCTTGCAGCAGCACGCTCAAA 955 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1090 GGGCTCCCCAGTTGCCATACGAGAAAAGAATGGACTTTCTCTTGCAGCAGCATGCTCAAA 1149 Query 956 GAGATGGTGGACTGCCTTTTGGTGATGAAAGATTTTGGAGCAGCAGCCCAGGACGGCTTG 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1150 GAGATGGTGGACTGCCTTTTGGTGATGAAAGATTTTGGAGCAGCAGCCCAGGACGGCTTG 1209 Query 1016 AGAGGATGGAACTAATGGCAATGCATTTAGGTGATCAGTCAAACTCCGCATCTAGACAGA 1075 |||||||||| || ||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1210 AGAGGATGGAGCT---GGCAATGCATTTAGGTGATCAGTCAAATTCGGCATCTAGACAGA 1266 Query 1076 TTTACTTGACATTCCCAGCTGACAGCACGTTTAAGGATGAGGATGTTGCTACATATTTCA 1135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1267 TTTACTTGACATTCCCAGCTGACAGCACGTTTAAGGATGAGGATGTTGCTACATATTTCA 1326 Query 1136 GCCTTTTTGGAACAGTGCAAGATGTGCGGATCCCATACCAGCAGAAGCGTATGTTTGGCT 1195 |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1327 GCCTCTTTGGAACAGTCCAAGATGTGCGGATCCCATACCAACAGAAGCGTATGTTTGGCT 1386 Query 1196 TTGTTTCATTTGCTCATCCTGAGACAGTGAAAGTTGTACTAGCTAGAGGGAATCCCCATT 1255 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1387 TTGTTTCATTTGCTCATCCCGAGACAGTGAAAGTTGTACTAGCTAGAGGGAATCCCCATT 1446 Query 1256 TCATTTGCGACTCACGGGTGCTTGTCAAACCTTACAAAGAAAAAGGCAAAGTCTTGGACA 1315 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1447 TCATTTGCGACTCACGGGTTCTTGTCAAACCTTACAAAGAAAAAGGCAAAGTCTTGGACA 1506 Query 1316 AGAAGCAACAGCAACTGCTGCAACAGCAGATTGAGCGGGGAAATTACTCCCCGTGCTCCA 1375 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 1507 AGAAGCAACAGCAACTGCTACAACAGCAGATTGAGCGAGGAAATTACTCCCCGTGCTCCA 1566 Query 1376 GTCCTTCTGGGGTTGATCCTAGAGAACAGTCTGATTTCCACCTTGTAGGTTCGAAGATGC 1435 |||| |||||| ||||||||||||||||||||||||||||||||| | ||| |||||| Sbjct 1567 GTCCATCTGGGATTGATCCTAGAGAACAGTCTGATTTCCACCTTG--G-TTCAAAGATGT 1623 Query 1436 TGTATGAGAGACGTGAGATGATGAGAAGGAAAATGGAGCAGGCTGATCTCCTGAGGGCTA 1495 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1624 TGTATGAGAGACGTGAGATGATGAGAAGGAAAATAGAGCAGGCTGATCTCCTGAGGGCTA 1683 Query 1496 TTGAACTCGAAAGAAGACGTTTCATAAATTTGCAGCTTCCTGAGTTCAAGAATAGTGTAA 1555 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1684 TTGAACTCGAAAGAAGACGTTTCATTAATTTACAGCTTCCTGAGTTCAAGAATAGTGTAA 1743 Query 1556 TGCAGAATCATCACCGTAGCTTTTCTGTGGGGTCTCCTGGTTATTTTTCGTCTGCCAGCA 1615 || ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1744 CGCTGAATCATCACCGTAGCTTTTCTGTGGGGTCTCCTGGTTATTTTTCATCTGCCGGCA 1803 Query 1616 ACCAAAGCCCTGATTTTCAATCTGAACTTA-CAGTTGCAGATGCTTTAGAAGTAGTTGAT 1674 | |||||||||||||||||||||||||||| | || |||||||||||| ||||| |||| Sbjct 1804 ATCAAAGCCCTGATTTTCAATCTGAACTTAACGGT-GCAGATGCTTTAAAAGTAACTGAT 1862 Query 1675 GATACCTCGGAGCTGCATCCTTACCCTGTAATCAACCCAATGAGTGTTAACAATAATTAC 1734 ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| ||| Sbjct 1863 GATACCTTGGAGCTGCATCCTTACCCAGTAGTCAACCCAATGAGTGTTAACAATAGCTAC 1922 Query 1735 TCAAACGGTGCAAAAGAAGGGACTGACAAGAGTGAATTGCTTGAACCCGATACGGGAAGC 1794 ||||||||||||||||||| |||| ||||||||||||||||||| |||||| | |||||| Sbjct 1923 TCAAACGGTGCAAAAGAAGAGACTAACAAGAGTGAATTGCTTGATCCCGATTCTGGAAGC 1982 Query 1795 ACTATAGAGCTTGTTCTTCCCAGTAACCTGTTCCCTTCTGCATCATCTACCGATGATCAC 1854 || || |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1983 ACCATTGAGCTTGTTCTTCCTAGTAACCTCTTCCCTTCTGCATCATCTACCGATGATCAC 2042 Query 1855 AAAACCGATGATTCTGCTGCAACTAATGCAAAAGTTGGAGTCTCCTGTACTAATGGAAAT 1914 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 2043 AAAACCGATGATTCTGCTGAAACTAATGCAAAAGTTGGAGTCTCCTCTACTAATGAAAAT 2102 Query 1915 GACAATGAACCACCAGTCACTACCAATAATCTGATGCAGTAG 1956 ||| |||||||||||||||||||||||||||||||||||||| Sbjct 2103 GACCATGAACCACCAGTCACTACCAATAATCTGATGCAGTAG 2144 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96887051850 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5