BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326204
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17780.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1711 0.0
> AT5G17780.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:5867283-5869050 REVERSE LENGTH=1480
Length=1480
Score = 1711 bits (926), Expect = 0.0
Identities = 1155/1264 (91%), Gaps = 21/1264 (2%)
Strand=Plus/Plus
Query 1 ATGTCTTTCCAGAGAAAATCCGGGACAGCGATTCACGTCGCTCTATCTTCAATCGTATTC 60
|||||||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 75 ATGTCTTTCCCGAGAAAATTCGGGACAGCGATTCACGCCGCTCTATCTTTTATCGTCTTC 134
Query 61 TTCTTCTTGGACCTCATTGACGCGATTCTCTGCGTCGTTTACGAGTTCGTCGACGAGATT 120
|| |||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 135 TTTTTCTTGGACCTCCTCGACGCGATTCTCTGTGTCGTTTACGAGTTCGTCGATGAGATT 194
Query 121 TTGGAAGGAAAA-TCAAGAGACTGTTACTGCACGGCGGCAGCGGCTTCTCAAATTCAAAC 179
|||||| ||||| |||| || |||||||||||||| | |||||| |||||| ||||||
Sbjct 195 TTGGAA-GAAAACTCAACAGGTTGTTACTGCACGGC-G--GCGGCTCCTCAAAGTCAAAC 250
Query 180 CACCTG-TGAAAATGA-AT-T-GTCAGAGACTTTATTCCGGAGGAGAAACATTTTCCAGG 235
|||| | |||||||| | | ||| |||||||||||| |||||||||||||||||| ||
Sbjct 251 CACC-GACGAAAATGAGTTGTCGTCGGAGACTTTATTCGGGAGGAGAAACATTTTCCGGG 309
Query 236 AAATGTGGTTTCTGGGATTCGCTAGAAAATTCAAATCCAAGCTTTCTCGGGAAA-TGA-A 293
||||||||||||||||||||| ||| ||||||||||||||||||| | ||||| ||| |
Sbjct 310 GAATGTGGTTTCTGGGATTCGCGAGAGAATTCAAATCCAAGCTTTC-CCGGAAACTGAGA 368
Query 294 AATTTCTGAGATTCA-C--GAGTCGGTGAATAGATGGTCAGACTGTGGATGCCAATCTTG 350
|| ||| ||||||| | ||||| |||||| |||||||||| ||||||||| |||||||
Sbjct 369 AA-ATCTAAGATTCATCAAGAGTCAGTGAATCGATGGTCAGATTGTGGATGCAAATCTTG 427
Query 351 CAATTCGTGGACGAAGAACAAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTC 410
||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 428 CAAGTCATGGACTAAGAACGAAGATGGGAATCTTCACGTCGTGGTCAAAGATTCTACTTC 487
Query 411 TCCAGAAACAGAGTACTCTGTTCAAGAACCGTCTGAGAATGTAATATTTATACATGGTTT 470
|| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 488 TCGAGAAACAGAGTACTCTGTTCAAGAACCGTCCGAGAATGTAATATTCATACACGGTTT 547
Query 471 TATGGGTTCATCGCATTTTTGGACAGAGACTGTGTTTGAACTCATT-AAGAAAGATGATT 529
|||||| ||||| |||||||||||||| ||||| ||||||| |||| || ||||||||||
Sbjct 548 TATGGGGTCATCACATTTTTGGACAGAAACTGTATTTGAACACATTCAA-AAAGATGATT 606
Query 530 ATAGGCTCTTCGCTATCGATCTTTTGGGATTCGGGGATAGTCCTAAGCCAAGAGATAGTT 589
|||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 607 ATAGGCTCCTCGCGATCGATCTTTTGGGATTCGGGGAGAGTCCTAAGCCAAGGGATAGTC 666
Query 590 TCTATACATTGAGAGATCATGTGGAGACGATAGAGAGATCTGTCATTAAGCCGTGTCAAT 649
|||||||||||| |||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 667 TCTATACATTGAAAGATCATGTGGATACGATAGAGAGATCTGTCATTAAGCCATACCAAT 726
Query 650 TAGATTCATTTCATGTAGTTGCACATTCGATGGGTTGCTTAATTGCTCTTGCTTTGGCTG 709
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 727 TAGATTCTTTTCATGTGGTTGCACATTCAATGGGTTGCTTAATTGCTCTTGCTTTGGCTG 786
Query 710 CTAAACACTCCAACATTGTTAAATCCGTCACTCTTGTTGCACCGCCTTATTTTCCTTCAT 769
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 787 CTAAACATTCCAACATTGTTAAATCCGTTACTCTTGTTGCACCGCCTTATTTTCCTTCAT 846
Query 770 CAGTTGAAGGATCAGTCTTGAATCGAATCGCTAAAAAGCGGTTGTGGCCGCCGCTTGCGT 829
| || |||||||| |||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 847 CGGTAGAAGGATCGGTCTTGAACCGAATCGCTAGAAAGCGGTTGTGGCCACCGCTTGCGT 906
Query 830 TTGGAACCGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCT 889
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 TTGGGACAGCGGTGATGTCTTGGTATGAACATATTGGTAGATGCGTATGTTTCATAATCT 966
Query 890 GCAAGCATCACAAGATATGGGAGTGGCTAATCAAGCTATGTATGGGTAAAAGGGAGATTC 949
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 967 GCAAGCATCATAAGATATGGGAGTGGCTAATCAAGCTATGTATAGGTAAAAGGGAGATTC 1026
Query 950 CTTGGAAGATAAAAGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACA 1009
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 ATTGGAAGATCAAGGACATAACAAGGCACACACATCACTCTGCATGGCATAGTATGCACA 1086
Query 1010 ATGTGATATGTGGTGGCTCCAAATTTGCTGATGAACATCTCGAGACCCTAATAAATTCTG 1069
||||||||||||||||||||||| | |||||||||||||| || ||||||||||| ||||
Sbjct 1087 ATGTGATATGTGGTGGCTCCAAAGTCGCTGATGAACATCTTGAAACCCTAATAAAGTCTG 1146
Query 1070 GCGTTAAGATTCACTTGATGCAAGGCGACCGCGAT-AGAATCGTTCCTTCACATTGCTCT 1128
||||||||||||||||||||||||||||| | || | ||||||||||||||||||||||
Sbjct 1147 GCGTTAAGATTCACTTGATGCAAGGCGACTGTGACCA-AATCGTTCCTTCACATTGCTCT 1205
Query 1129 AGCAACATGAAGAGGAGATTTCCGTCGGTGGAAGTTGATATCATCGCTGGTGCTGATCAT 1188
||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1206 GGCAACATGAAGAGGACTTTTCCGGCGGTGGAAGTTGATATCATTACTGGTGCTGATCAT 1265
Query 1189 GATAGTATGATAAGTGGAAGAGGAGAAGAGTTTGTTGAGAAATTGGAGAGCATTTGGTGT 1248
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1266 GATAGTATGATAAGCGGAAGAGGAGAAGAGTTTGCTGAGAAATTGGAGAGCATTTGGTGT 1325
Query 1249 TCAT 1252
||||
Sbjct 1326 TCAT 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5