BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326806

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superf...   942    0.0  


> AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superfamily 
protein | chr5:8820476-8821992 FORWARD LENGTH=982
Length=982

 Score =  942 bits (510),  Expect = 0.0
 Identities = 550/570 (96%), Gaps = 0/570 (0%)
 Strand=Plus/Plus

Query  1    ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAACGTCAGTGGGGTTCTTGGGTCTCC  60
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || 
Sbjct  162  ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCT  221

Query  61   GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA  281

Query  121  ACAGCGGCTAGAGCCTATGACCAAGCCGCGATTCTAATGAACGGCCAGAACGCGAAGACT  180
            ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||
Sbjct  282  ACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACT  341

Query  181  AACTTCCCCGTCATCAAATCCAACGGTTCAGATTCCTTGGAGGTTAACTCTACGTTAAGG  240
            |||||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||
Sbjct  342  AACTTCCCCGTCATCAAATCGAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGG  401

Query  241  TCTCCCAAATCATTGTCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG  300
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  402  TCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG  461

Query  301  ACACCGTATCTGACGTGTCTCCGCCTAGACAACGACAGCTCACACATCGGCGTCTGGCAG  360
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  462  ACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAG  521

Query  361  AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAGT  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct  522  AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAAA  581

Query  421  GTTAACGCACGTCCCGGTGGTGATATTGGGACTAATAAGATGAAGAAACGAAACGATGAC  480
            |||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||
Sbjct  582  GTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGAC  641

Query  481  GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT  540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  642  GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT  701

Query  541  CCTGCTTCTGGATCCATTGCACAGGTCTAA  570
            ||||  ||||||||||||||||||||||||
Sbjct  702  CCTGGATCTGGATCCATTGCACAGGTCTAA  731



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5