BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326806 Length=570 Score E Sequences producing significant alignments: (Bits) Value AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superf... 942 0.0 > AT5G25390.2 | Symbols: SHN2 | Integrase-type DNA-binding superfamily protein | chr5:8820476-8821992 FORWARD LENGTH=982 Length=982 Score = 942 bits (510), Expect = 0.0 Identities = 550/570 (96%), Gaps = 0/570 (0%) Strand=Plus/Plus Query 1 ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAACGTCAGTGGGGTTCTTGGGTCTCC 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 162 ATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCT 221 Query 61 GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 222 GAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAA 281 Query 121 ACAGCGGCTAGAGCCTATGACCAAGCCGCGATTCTAATGAACGGCCAGAACGCGAAGACT 180 ||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| Sbjct 282 ACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACT 341 Query 181 AACTTCCCCGTCATCAAATCCAACGGTTCAGATTCCTTGGAGGTTAACTCTACGTTAAGG 240 |||||||||||||||||||| ||||||||| ||||||||||| |||||||| |||||||| Sbjct 342 AACTTCCCCGTCATCAAATCGAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGG 401 Query 241 TCTCCCAAATCATTGTCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG 300 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 402 TCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAG 461 Query 301 ACACCGTATCTGACGTGTCTCCGCCTAGACAACGACAGCTCACACATCGGCGTCTGGCAG 360 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 462 ACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAG 521 Query 361 AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 522 AAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAAA 581 Query 421 GTTAACGCACGTCCCGGTGGTGATATTGGGACTAATAAGATGAAGAAACGAAACGATGAC 480 |||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| Sbjct 582 GTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGAC 641 Query 481 GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 GTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGT 701 Query 541 CCTGCTTCTGGATCCATTGCACAGGTCTAA 570 |||| |||||||||||||||||||||||| Sbjct 702 CCTGGATCTGGATCCATTGCACAGGTCTAA 731 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27377610115 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5