BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326886 Length=2247 Score E Sequences producing significant alignments: (Bits) Value AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | ... 3735 0.0 > AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | chr5:9284986-9289003 REVERSE LENGTH=2933 Length=2933 Score = 3735 bits (2022), Expect = 0.0 Identities = 2176/2251 (97%), Gaps = 8/2251 (0%) Strand=Plus/Plus Query 1 ATGGCGTCGACGGTAGGAGTTCCATCACTTTACCAAGTTCCTCACCTTGAAATCTCCAAA 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 133 ATGGCGTCGACGGTAGGAGTTCCATCACTATACCAAGTTCCTCACCTTGAAATCTCCAAA 192 Query 61 CCCAATTCCAAAAAGAGGTCTAATTGCTTCTCTTTATCTCTCGATAAGCCTTTCTTCACT 120 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 193 CCCAATTCCAAAAAGAGGTCTAATTGTTTATCTTTATCTCTCGATAAGCCTTTCTTCACT 252 Query 121 CCTCCTATCTCTCTTGCTCGTAGAACTCGTCTTATCCATTCCTCTTCTCTTCTTGTTCCT 180 | ||| | ||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 253 -C-CCT-TATCTCTTGTTCGTAGAACTCGTCGTATCCATTCCTCTTCTCTTCTTGTTCCT 309 Query 181 TCTGCTGTTGCTACCCCTAATTCTGTTCTTAGTGAAGAAGCTTTCAAAAGTCTTGGTCTT 240 |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 310 TCTGCTGTTGCTACTCCTAATTCTGTTCTCAGTGAAGAAGCTTTCAAAAGTCTTGGTCTT 369 Query 241 TCTGACCATGACGAGTATGACCTTGACGGTG---ACAACAACGTTGAAGCTGATGATGGT 297 |||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| Sbjct 370 TCTGACCATGACGAATATGACCTTGACGGCGACAACAACAACGTTGAAGCTGATGATGGT 429 Query 298 GAAGAGCTTGCTATCTCTAAACTTAGTTTGCCTCAGCGTCTTGAAGAGTCTCTTGAGAAG 357 ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 430 GAAGAACTCGCTATCTCTAAACTTAGTTTGCCTCAACGTCTTGAAGAGTCTCTTGAGAAA 489 Query 358 CGTGGTATTACTCATCTCTTCCCCATTCAGAGAGCTGTGTTGGTACCTGCACTGCAAGGA 417 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 490 CGTGGTATCACTCATCTCTTCCCCATTCAGAGAGCTGTGTTGGTACCTGCACTGCAAGGA 549 Query 418 AGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTAGCTTTTGGTATCCCT 477 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 550 AGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTGGCTTTTGGTATTCCT 609 Query 478 ATCATTAAACGTCTCACTGAAGAAGCTGGAGACTACACTGCTTTCAGGAGGTCTGGTCGT 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 610 ATCATTAAACGTCTCACTGAAGAAGCTGGAGACTACACTGCTTTCAGGAGGTCTGGTCGT 669 Query 538 CTTCCTAAGTTCCTTGTTCTTGCGCCGACTCGAGAGCTGGCTAAGCAAGTGGAGAAGGAG 597 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 670 CTTCCTAAGTTCCTTGTCCTTGCGCCGACCCGAGAGCTGGCTAAGCAAGTGGAGAAGGAG 729 Query 598 ATTAAGGAGTCTGCACCTTATTTGAGTACCGTTTGTGTGTATGGTGGG-GTTTCTTACAC 656 |||||||||||||||||||||||||| || |||||||||||||| ||| |||||||| || Sbjct 730 ATTAAGGAGTCTGCACCTTATTTGAGCACTGTTTGTGTGTATGG-GGGAGTTTCTTATAC 788 Query 657 CATTCAGCAGAGTGCTTTGACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGGAGGAT 716 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 789 CATTCAGCAGAGTGCTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGAAGAAT 848 Query 717 CATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTCGAGTATTTGGTACTTGA 776 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 849 CATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTTGAGTATTTGGTACTTGA 908 Query 777 TGAAGCTGATCAGATGCTTGCTGTTGGTTTTGAGGAGGCCGTGGAATCGATTCTTGAGAA 836 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 909 TGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGCCGTGGAATCGATTCTTGAGAA 968 Query 837 TCTCCCAACTAAGCGACAAAGTATGCTTTTCTCAGCTACTATGCCTACTTGGGTTAAGAA 896 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 969 TCTTCCAACTAAGCGACAAAGTATGCTTTTCTCAGCAACTATGCCTACTTGGGTTAAGAA 1028 Query 897 GTTGGCGAGGAAGTACCTTGACAATCCCTTGAACATTGATCTGGTTGGAGACCAAGATGA 956 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1029 GTTGGCGAGGAAGTACCTTGACAATCCCTTGAATATTGATCTGGTTGGAGACCAAGATGA 1088 Query 957 GAAGCTAGCAGAGGGGATCAAACTTTATGCAATCGCAACCACATCAACATCAAAACGCAC 1016 |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1089 GAAGCTCGCAGAGGGTATCAAACTTTATGCAATCGCAACCACATCGACATCAAAACGCAC 1148 Query 1017 TATTCTAAGCGACCTTATAACAGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACTCA 1076 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1149 TATTCTAAGCGACCTTATTACAGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACCCA 1208 Query 1077 AACTAAAAGAGATGCAGACGAAGTTTCTCTTGCATTGTCAAACAGTATAGCTACCGAAGC 1136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1209 AACTAAAAGAGATGCAGACGAAGTTTCTCTTGCATTGTCAAACAGTATAGCTACCGAAGC 1268 Query 1137 ACTTCATGGAGATATATCCCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGCCAAGG 1196 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1269 ACTTCATGGAGATATATCTCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGTCAAGG 1328 Query 1197 GAAATTCACTGTATTAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCAAACGT 1256 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1329 GAAATTCACCGTATTAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCGAACGT 1388 Query 1257 AGATCTAGTTATCCACTATGAACTTCCTAATGACCCAGAGACTTTTGTGCACCGTTCTGG 1316 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1389 AGATCTAGTTATCCACTATGAACTTCCTAATGACCCAGAAACTTTTGTGCACCGTTCTGG 1448 Query 1317 TCGTACTGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAA 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1449 TCGTACTGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAA 1508 Query 1377 GAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTAGCCCACC 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1509 GAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTAGCCCACC 1568 Query 1437 AACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGCTGT 1496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1569 AACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGGTGT 1628 Query 1497 CCACCCTGACTCGATAAAGTTTTTCTCAGCAACTGCTCAAAAACTATATGAGGAAAAAGG 1556 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1629 TCACCCTGACTCCATAAAGTTTTTCTCAGCAACTGCTCAAAAACTATATGAGGAGAAAGG 1688 Query 1557 AACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGCGGTTTCTCTCAGCCGCCTTCATC 1616 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1689 AACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGTGGTTTCTCTCAGCCGCCTTCATC 1748 Query 1617 AAGATCTCTCCTCAGCCATGAGAAGGGATGGGTGACTTTGCAATTGATCCGAGATCCAAC 1676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1749 AAGATCTCTCCTCAGCCATGAGAAGGGATGGGTGACTTTGCAATTGATCCGAGATCCAAC 1808 Query 1677 AAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATGTTTACCG 1736 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1809 GAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATCTTTACCG 1868 Query 1737 TACAGCTGCAGATGAAGTTGGAAAAATCTTCTTGATCGCAGATGACAGGGTCCAAGGAGC 1796 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 1869 TACAGCTGCAGATGAAGTTGGAAAAATCTTCTTGATCGCCGATGACAGGATCCAAGGAGC 1928 Query 1797 TGTTTTTGATCTACCAGAGGAAATCGCGAAAGAGCTCCTAGAGAAAGAAGTGCCAGAAGG 1856 ||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct 1929 TGTATTTGATCTACCAGAGGAGATCGCGAAAGAGCTCCTAGAGAAAGATGTCCCCGAAGG 1988 Query 1857 AAACAGTTTATCCATGATAACCAAGTTACCTCCACTGCAAGATGATGGACCGTCTAGTGA 1916 |||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| Sbjct 1989 CAACAGTTTATCCATGATAACAAAGTTACCTCCACTTCAAGATGACGGACCATCTAGTGA 2048 Query 1917 TAACTATGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGG 1976 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2049 TAACTACGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGG 2108 Query 1977 GTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGA 2036 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2109 GTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGA 2168 Query 2037 CAGAGGAAGTAGAAGGAGCAGTGGCGGAGGAAGCAGCTGGTCCCGTGGTGGTAGTAGTTC 2096 |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 2169 CAGAGGTAGTAGAAGGAGCAGTGGTGGAGGAAGCAGCTGGTCCCGAGGTGGTAGTAGTTC 2228 Query 2097 CAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCC 2156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2229 CAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCC 2288 Query 2157 TTCGCGAGAGAGAAGTTTTGGAGGTTCTTGCTTCATTTGTGGGAAATCAGGACACAGGGC 2216 |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 2289 TTCGCGGGAGAGAAGTTTTGGAGGTTCATGCTTCATTTGTGGGAAATCTGGACACAGGGC 2348 Query 2217 AACAGATTGTCCTGACAAGAGAGGATTTTAG 2247 ||||||||||||||| ||||||||||||||| Sbjct 2349 AACAGATTGTCCTGATAAGAGAGGATTTTAG 2379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111495410445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5