BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327070
Length=2073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08920.1 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptoch... 3417 0.0
> AT4G08920.1 | Symbols: CRY1, BLU1, HY4, OOP2, ATCRY1 | cryptochrome
1 | chr4:5724103-5727253 FORWARD LENGTH=2551
Length=2551
Score = 3417 bits (1850), Expect = 0.0
Identities = 1980/2045 (97%), Gaps = 0/2045 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGGTTCTGTTTCTGGTTGTGGTTCTGGTGGTTGTAGTATTGTATGGTTTAGAAGA 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ATGTCTGGTTCTGTATCTGGTTGTGGTTCTGGTGGTTGTAGTATTGTATGGTTTAGAAGA 217
Query 61 GATCTTAGGGTTGAAGATAATCCAGCTTTAGCTGCAGCAGTAAGAGCTGGTCCAGTGATT 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 218 GATCTTAGGGTTGAAGATAATCCAGCTTTAGCAGCAGCAGTAAGAGCTGGTCCAGTGATT 277
Query 121 GCTCTGTTTGTATGGGCACCAGAAGAAGAAGGACACTATCATCCAGGTAGGGTTTCTAGG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GCTCTGTTTGTTTGGGCACCAGAAGAAGAAGGACACTATCATCCAGGTAGGGTTTCTAGG 337
Query 181 TGGTGGCTCAAGAACAGTTTGGCTCAGCTTGATTCTTCTCTTAGAAGTCTTGGTACTTGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 TGGTGGCTCAAGAACAGTTTGGCTCAGCTTGATTCTTCTCTTAGAAGTCTTGGTACTTGT 397
Query 241 CTCATCACCAAGAGATCTACTGATAGTGTTGCTTCTCTTCTTGATGTTGTTAAATCCACT 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 CTTATCACCAAGAGATCTACTGATAGTGTTGCTTCTCTTCTTGATGTTGTTAAATCCACT 457
Query 301 GGTGCTTCTCAGATCTTCTTCAACCATTTGTATGATCCATTGTCTTTGGTGCGTGATCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GGTGCTTCTCAGATCTTCTTCAACCATTTGTATGATCCATTGTCTTTGGTGCGTGATCAC 517
Query 361 CGTGCTAAAGATGTTTTGACGGCACAAGGCATAGCGGTTCGATCATTCAACGCAGATTTG 420
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 518 CGAGCTAAAGATGTTTTGACGGCGCAAGGCATAGCGGTTCGATCATTCAACGCAGACTTG 577
Query 421 CTTTATGAGCCGTGGGAAGTGACTGATGAATTAGGCCGTCCTTTCTCTATGTTTGCTGCG 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CTTTATGAGCCATGGGAAGTGACTGATGAATTAGGCCGTCCTTTCTCTATGTTTGCTGCG 637
Query 481 TTTTGGGAAAGATGTCTTAGTATGCCTTATGACCCTGAGTCTCCTCTTCTTCCACCTAAG 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTTTGGGAGAGATGTCTTAGTATGCCTTATGACCCTGAGTCTCCTCTTCTTCCACCTAAG 697
Query 541 AAGATCATTTCAGGGGATGTGTCTAAGTGTGTTTCGGATCCATTGGTCTTTGAAGATGAA 600
|||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |||||
Sbjct 698 AAGATCATTTCAGGGGATGTGTCTAAATGTGTTGCGGATCCATTGGTGTTTGAGGATGAC 757
Query 601 TCAGAGAAAGGAAGTAATGCACTTCTGGCTCGTGCTTGGTCTCCGGGATGGAGTAATGCT 660
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 758 TCTGAGAAAGGAAGCAATGCACTTCTGGCTCGTGCTTGGTCTCCTGGATGGAGTAATGGT 817
Query 661 GATAAAGCTCTCACAACGTTCATAAACGGACCATTGATTGAATACTCTAAGAACCGCAGG 720
|||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 818 GATAAAGCTCTCACAACGTTTATAAACGGTCCATTGCTTGAATACTCTAAGAACCGCAGA 877
Query 721 AAAGCTGATAGTGCCACAACCTCGTTTCTTTCTCCACACTTGCATTTTGGGGAAGTGAGT 780
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 AAAGCCGATAGTGCTACAACCTCGTTTCTTTCTCCACACTTGCATTTTGGGGAAGTGAGT 937
Query 781 GTGAGAAAAGTTTTCCATCTTGTTCGGATCAAGCAGGTCGCGTGGGCAAACGAAGGAAAC 840
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 938 GTGAGAAAAGTTTTTCATCTTGTTCGGATCAAACAGGTCGCGTGGGCAAACGAAGGAAAC 997
Query 841 GAGGCTGGGGAAGAAAGTGTGAATCTTTTCCTGAAATCGATTGGTCTGAGGGAGTATTCT 900
||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 998 GAGGCCGGGGAAGAAAGCGTGAATCTTTTCCTGAAATCTATTGGTCTCAGGGAGTATTCT 1057
Query 901 AGATATATAAGTTTTAACCATCCATACTCCCATGAAAGACCGCTTCTTGGCCATCTAAAG 960
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1058 AGGTACATAAGTTTTAACCATCCATATTCCCATGAAAGACCACTTCTTGGCCATCTAAAG 1117
Query 961 TTCTTCCCTTGGGCTGTGGATGAGAACTATTTCAAGGCATGGAGACAAGGCCGGACTGGA 1020
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1118 TTCTTCCCTTGGGCTGTGGATGAGAACTATTTCAAGGCATGGAGGCAAGGCCGGACTGGA 1177
Query 1021 TATCCGTTGGTCGATGCCGGGATGAGAGAGTTATGGGCTACTGGTTGGTTGCACGATCGC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1178 TATCCGTTGGTCGATGCCGGGATGAGAGAGTTATGGGCTACTGGTTGGTTGCATGATCGC 1237
Query 1081 ATAAGAGTAGTTGTTTCAAGCTTCTTTGTTAAAGTGCTTCAATTGCCATGGCGATGGGGG 1140
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1238 ATAAGAGTAGTTGTTTCAAGCTTCTTTGTTAAAGTGCTTCAATTACCATGGAGATGGGGG 1297
Query 1141 ATGAAGTATTTCTGGGACACCCTTATTGATGCGGATTTAGAAAGTGATGCTCTTGGTTGG 1200
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 1298 ATGAAGTATTTCTGGGACACACTTCTTGATGCGGATTTAGAAAGCGATGCTCTTGGTTGG 1357
Query 1201 CAATACATTACTGGTACTCTCCCGGATAGCCGAGAGTTTGATCGCATAGATAATCCTCAG 1260
||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1358 CAATACATTACCGGTACTCTCCCGGATAGCCGGGAGTTTGATCGCATAGATAACCCTCAG 1417
Query 1261 TTTGAAGGGTACAAGTTTGACCCAAATGGGGAATACGTAAGGCGATGGCTTCCAGAACTC 1320
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1418 TTTGAAGGGTACAAGTTTGATCCAAATGGTGAATACGTAAGGCGATGGCTTCCTGAACTC 1477
Query 1321 TCTAGACTCCCCACAGACTGGATACATCATCCGTGGAACGCACCTGAGTCTGTTCTTCAA 1380
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1478 TCTAGACTCCCGACAGACTGGATACATCATCCGTGGAACGCACCTGAGTCCGTTCTTCAA 1537
Query 1381 GCTGCTGGTATCGAGCTTGGATCAAACTATCCTCGACCAATTGTAGGATTAGATGAAGCA 1440
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1538 GCTGCTGGTATCGAGCTTGGATCAAACTATCCTCTACCAATTGTAGGATTAGACGAAGCA 1597
Query 1441 AAAGCACGGCTTCATGAAGCGCTTTCACAGATGTGGCAACTAGAAGCTGCTTCAAGAGCA 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 AAAGCACGGCTTCATGAAGCGCTTTCACAGATGTGGCAACTAGAAGCTGCTTCAAGAGCT 1657
Query 1501 GCAATAGAGAACGGATCCGAAGAAGGACTTGGAGATTCTGCTGAGGTGGAAGAAGCTCCT 1560
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1658 GCAATAGAGAACGGATCCGAAGAAGGACTTGGAGATTCTGCTGAGGTAGAGGAAGCTCCT 1717
Query 1561 ATAGAGTTCCCAAGGGACATCACAATGGAAGAGACTGAACCAACCAGACTCAACCCAAAC 1620
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1718 ATAGAGTTCCCAAGGGACATTACAATGGAAGAGACTGAACCAACCAGACTCAACCCAAAC 1777
Query 1621 AGGAGATATGAGGATCAGATGGTTCCAAGCATTACTTCTTCTTTGATCAGACCTGAAGAA 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 AGGAGATATGAGGATCAGATGGTTCCAAGCATTACTTCTTCTTTGATCAGACCTGAAGAA 1837
Query 1681 GACGAAGAGTCGTCTCTGAATTTGAGAAATTCAGTAGGAGATAGCAGAGCAGAGGTTCCG 1740
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 GACGAAGAGTCGTCTCTTAATTTGAGAAATTCAGTAGGAGATAGCAGAGCAGAGGTTCCA 1897
Query 1741 AGGAACATGGTCAACACCAACCAAGCTCAGCAGCGGAGAGCAGAACCGGCTTCAAACCAA 1800
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 AGGAACATGGTTAACACCAACCAAGCTCAGCAGCGGAGAGCAGAACCGGCTTCAAACCAA 1957
Query 1801 GTCACTGCTATGATTCCAGAATTTAATATCAGAATTGTTGCAGAGAGCACTGAAGACTCA 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GTCACTGCTATGATTCCAGAATTTAATATCAGAATTGTTGCAGAGAGCACTGAAGACTCA 2017
Query 1861 ACAGCGGAATCTTCCAGCAGCGGAAGAAGAGAGAGAAGCGGAGGCATAGTCCCCGAGTGG 1920
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2018 ACAGCGGAATCTTCCAGCAGCGGAAGGAGAGAAAGAAGCGGAGGCATAGTCCCCGAGTGG 2077
Query 1921 TCTCCTGGGTACTCAGAACAGTTCCCTAGTGAAGAAAATGGGATTGGAGGAGGAAGTACA 1980
||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2078 TCTCCAGGGTACTCAGAGCAGTTCCCTAGTGAAGAAAATGGTATTGGAGGAGGAAGTACA 2137
Query 1981 ACATCTAGCTACTTGCAGAATCACCACGAAATACTGAACTGGAGACGGCTTTCACAAACC 2040
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2138 ACGTCTAGCTACTTGCAGAATCACCATGAAATACTGAACTGGAGACGGCTTTCACAAACC 2197
Query 2041 GGGTA 2045
|||||
Sbjct 2198 GGGTA 2202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102760515615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5