BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327396
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04450.1 | Symbols: WRKY42, AtWRKY42 | WRKY family transcrip... 2423 0.0
AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcripti... 279 4e-74
> AT4G04450.1 | Symbols: WRKY42, AtWRKY42 | WRKY family transcription
factor | chr4:2218379-2221114 FORWARD LENGTH=1588
Length=1588
Score = 2423 bits (1312), Expect = 0.0
Identities = 1501/1593 (94%), Gaps = 9/1593 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCGTTTTCCGGTAAGTCTTGGAGGAGGTCCACGTGACAATAC-GAAGCCGTTGGA 59
||||||||||||||||||||||||||||||||||||||||| ||| | |||||| | ||
Sbjct 1 ATGTTTCGTTTTCCGGTAAGTCTTGGAGGAGGTCCACGTGAGAAT-CTGAAGCCATCAGA 59
Query 60 TGAGCAGCATCATCGGGCGGTGGTGGATGAGGTTGACTTTTTCCGATCGGCGGAGAAGAG 119
|||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 60 TGAGCAGCATCAACGTGCGGTGGTGAATGAGGTTGACTTTTTCCGATCAGCGGAGAAGAG 119
Query 120 AGATAGGGTTTCACGTGATGATCAAGATATGATCGCCGATCATGAGACTCATAGGGTTCA 179
|||||||||||||||||| || ||| | || ||||||| |||||||||||||||||||
Sbjct 120 AGATAGGGTTTCACGTGAAGAACAAAACATTATCGCCG---ATGAGACTCATAGGGTTCA 176
Query 180 TGTCAAAAGGGAGAATTCACGTGTTGATGATCATGAAGATCGTTCTACGGATCATATCAA 239
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 177 TGTCAAAAGGGAGAATTCACGTGTTGATGATCATGACGATCGTTCTACTGATCACATCAA 236
Query 240 TATTGGACTTAATCTTCTCACTGCGAATACGGGAAGCGACGAGTCAATGGTGGATGATGG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TATTGGACTTAATCTTCTCACTGCGAATACGGGAAGCGACGAGTCAATGGTGGATGATGG 296
Query 300 ATTGTCTGTGGATATGGAAGAGAAACGTACAAAGTGTGAGAATGCGCAACTTCGAGAAGA 359
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 297 ATTGTCTGTGGATATGGAAGAGAAACGTACAAAGTGTGAGAATGCACAACTTCGCGAAGA 356
Query 360 GCTAAAGAAGGCGAGTGAAGATAATCAAAGACTAAAAG-AAATGCTAAGTCAAACAACCA 418
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 357 GCTAAAGAAGGCGAGTGAAGATAATCAAAGACTAAA-GCAAATGCTAAGTCAAACAACCA 415
Query 419 ACAGCTTCAATTCCTTGCAGATGCAACTTGTTACTGTCATGAGGCAACAAGAAGATCATC 478
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 416 ACAACTTCAATTCCTTGCAGATGCAACTTGTTGCTGTCATGAGGCAACAAGAAGATCATC 475
Query 479 ATCACCTGGCTACAACTGAAAACAAAGACAACGCCACGAACCGACATGAAGTGCCTGAAA 538
||||||| ||||| || || ||||| ||||| | | |||||||||||||||||||||||
Sbjct 476 ATCACCTAGCTACGACCGAGAACAATGACAATGTAAAGAACCGACATGAAGTGCCTGAAA 535
Query 539 TGGTTCCGAA-ACAGTTCATCGATTTGGGACCGCAGTCAGATGAAGTGTCATCCGAGGAG 597
||||||| || |||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 536 TGGTTCC-AAGACAGTTCATCGATTTGGGACCGCATTCTGACGAAGTGTCGTCCGAGGAG 594
Query 598 AGGACGACGGTTCGGTCAGGATCTCCTCCATCGCTTCTAGAGAAATCTAGCTTACGTCAA 657
||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct 595 AGGACGACGGTTCGGTCGGGATCTCCTCCCTCGCTTCTAGAGAAATCTAGCTCACGTCAA 654
Query 658 AACGGAAAGAGACTGCTTGTAAGAGAAGAAAGCCCAGAAACCGAATCCAACAGCTGGAGA 717
|||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 655 AACGGAAAGAGAGTGCTTGTAAGAGAAGAAAGCCCGGAAACCGAATCCAACGGCTGGAGA 714
Query 718 AACCCTAACAAAGTTCCTAAACACCACGCATCCTCCAGCAATTGCGGTGGCAATGGCAGT 777
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 715 AACCCTAACAAAGTTCCTAAACACCATGCATCATCCAGCATTTGCGGTGGCAATGGCAGT 774
Query 778 GAAAATGCAAGTAGCAAGGTCATCGAGCAAGCGGCTGCGGAAGCCACCATGCGTAAAGCC 837
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 775 GAAAATGCAAGTAGCAAGGTCATTGAGCAAGCGGCCGCCGAAGCCACCATGCGTAAAGCC 834
Query 838 CGTGTTTCGGTTCGTGCTCGATCCGAAGCTAACATGCTAAGCGATGGATGTCAATGGAGA 897
||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 835 CGTGTCTCGGTTCGTGCTCGATCCGAAGCTCCCATGTTAAGCGATGGATGTCAATGGAGA 894
Query 898 AAATACGGGCAGAAAATGGCGAAAGGAAACCCGTGCCCTCGAGCTTATTACCGTTGCACA 957
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AAATACGGACAAAAAATGGCGAAAGGAAACCCGTGCCCTCGAGCTTATTACCGTTGCACA 954
Query 958 ATGGCCGTTGGATGCCCCGTTCGCAAGCAAGTGCAACGTTGCGCGGAAGACAGAACCATT 1017
||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 955 ATGGCTGTTGGATGTCCTGTTCGCAAGCAAGTGCAACGTTGCGCGGAAGATAGAACCATT 1014
Query 1018 CTCATAACAACCTACGAAGGAAACCATAACCATCCATTACCTCCCGCGGCTATGAACATG 1077
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 CTCATAACAACCTACGAAGGAAACCATAACCATCCATTACCTCCTGCGGCTATGAACATG 1074
Query 1078 GCTTCAACCACAACCGCAGCCGCAAGCATGCTCCTCTCAGGCTCCACAATGTCGAACCAA 1137
|||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1075 GCTTCAACTACAACAGCAGCCGCAAGCATGCTTCTCTCAGGCTCCACCATGTCGAACCAA 1134
Query 1138 GATGGTTTAATGAACCCAACAAATCTCTTGGCCCGAACCATCTTACCGTGTTCCTCAAGC 1197
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1135 GACGGTTTAATGAACCCAACAAATCTCTTGGCTCGAACCATATTACCGTGTTCCTCAAGC 1194
Query 1198 ATGGCCACTATCTCAGCCTCTGCACCATTCCCAACCATTACATTAGACCTCACAGACTCA 1257
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1195 ATGGCTACTATCTCAGCCTCTGCACCATTCCCAACCATTACATTAGACCTCACAGAGTCA 1254
Query 1258 TCCAACGGTAACAATCCAACTAATAACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTC 1317
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CCCAACGGGAACAATCCAACCAATAACCCGCTGATGCAATTCTCTCAACGGTCTGGTTTG 1314
Query 1318 GCGGAGTTGAATCAATCGGTTTTGCCTCATATGATGGGTCAGGCTTTGTACTACAACCAA 1377
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GTGGAGTTGAACCAATCGGTTTTGCCTCATATGATGGGTCAGGCTTTGTACTACAACCAA 1374
Query 1378 CAGTCTAAGTTCTCGGGTTTACATATGCCGTCTCAGCCTCTAAACGCTGGCGAGAGCGTT 1437
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 1375 CAGTCTAAGTTTTCGGGTTTACATATGCCGTCTCAGCCGCTAAACGCTGGTGAGAGTGTT 1434
Query 1438 AGCGCCGCTACTGCCGCCATCGCCTCCAACCCCAACTTTGCAGCGGCTCTAGCTGCAGCC 1497
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1435 AGCGCCGCTACTGCCGCAATCGCCTCCAATCCCAACTTTGCCGCGGCTCTAGCTGCAGCC 1494
Query 1498 ATAACTTCTATTATCAACGGTTCGAATACTCAGCAGAATGGGAACAACAATAACAGTAAT 1557
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1495 ATAACTTCGATTATCAACGGTTCGAACAATCAGCAGAATGGGAACAACAATAACAGTAAT 1554
Query 1558 GTCACCACGAGCAACGTTGACAATAGGCAATAA 1590
|| || |||||||||||||||||||||||||||
Sbjct 1555 GTTACAACGAGCAACGTTGACAATAGGCAATAA 1587
> AT1G62300.1 | Symbols: WRKY6, ATWRKY6 | WRKY family transcription
factor | chr1:23016683-23019279 REVERSE LENGTH=1990
Length=1990
Score = 279 bits (151), Expect = 4e-74
Identities = 350/446 (78%), Gaps = 13/446 (3%)
Strand=Plus/Plus
Query 817 GAAGCCACCATGCGTAAAGCCCGTGTTTCGGTTCGTGCTCGATCCGAAGCTAAC-ATGCT 875
||||| || ||| | ||||||||||| || |||||||| ||||| |||||| | ||| |
Sbjct 998 GAAGCTACGATGAGGAAAGCCCGTGTCTCCGTTCGTGCCCGATCGGAAGCT-CCGATGAT 1056
Query 876 AAGCGATGGATGTCAATGGAGAAAATACGGGCAGAAAATGGCGAAAGGAAACCCGTGCCC 935
||||||||||||||||||||||||||| || ||||| ||||| ||||| || || || ||
Sbjct 1057 AAGCGATGGATGTCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCC 1116
Query 936 TCGAGCTTATTACCGTTGCACAATGGCCGTTGGATGCCCCGTTCGCAAGCAAGTGCAACG 995
|| || |||||||| ||||| |||||| || || ||||||||||| ||||| |||||
Sbjct 1117 GCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAGTTCAACG 1176
Query 996 TTGCGCGGAAGACAGAACCATTCTCATAACAACCTACGAAGGAAACCATAACCATCCATT 1055
|||||||||||||||| | ||||| || ||||||||||| ||||||||||||||||| ||
Sbjct 1177 TTGCGCGGAAGACAGATCAATTCTGATTACAACCTACGAGGGAAACCATAACCATCCGTT 1236
Query 1056 ACCTCCCGCGGCTATGAAC-ATGGCTTCAACCACAACCGCAGCCGC-AAGCATGCTCCTC 1113
|| || || || | | | |||||||| ||||| || || || || || |||| | ||
Sbjct 1237 GCCGCCAGCCGCGGT-AGCCATGGCTTCTACCACCACGGCGGCGGCTAA-CATGTTGCTA 1294
Query 1114 TCAGGCTCCACAATGTCGAACCAAGATGGTTTAATGAACCCAACAAATCT-CTTGGCCCG 1172
|| || || | | |||| | || || || | |||||||| |||||| | || | | |
Sbjct 1295 TCCGGGTC-A-A-TGTCTAGTCACGACGGGATGATGAACCCTACAAATTTACTAG-CTAG 1350
Query 1173 AACCAT-CTTACCGTGTTCCTCAAGCATGGCCACTATCTCAGCCTCTGCACCATTCCCAA 1231
| | ||| || || ||| |||||||||| || ||||||||||| || || || ||||
Sbjct 1351 GGCTGTTCTT-CCTTGCTCCACAAGCATGGCAACAATCTCAGCCTCCGCGCCGTTTCCAA 1409
Query 1232 CCATTACATTAGACCTCACAGACTCA 1257
|| | |||||||||||||| |||||
Sbjct 1410 CCGTCACATTAGACCTCACCCACTCA 1435
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5