BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327595
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02050.1 | Symbols: STP7 | sugar transporter protein 7 | chr... 2416 0.0
> AT4G02050.1 | Symbols: STP7 | sugar transporter protein 7 | chr4:898307-900870
REVERSE LENGTH=1819
Length=1819
Score = 2416 bits (1308), Expect = 0.0
Identities = 1460/1535 (95%), Gaps = 3/1535 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGGGTCGTTTGGTCCGACCGGTGTGGCTAAGGAGAGAGCAGAACAATACCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 ATGGCAGGAGGGTCGTTTGGTCCGACCGGTGTGGCTAAGGAGAGAGCAGAACAATACCAA 257
Query 61 GGGAAAGTTACTAGTTATGTCATAATTGCTTGCCTTGTTGCAGCCATTGGTGGATCCATC 120
|||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 258 GGGAAAGTCACTAGTTATGTTATAATCGCTTGCCTTGTTGCAGCTATTGGTGGATCCATC 317
Query 121 TTTGGATATGACATTGGAGTCTCAGGAGGAGTTACGTCGATGGATGAGTTTCTTGAGGAG 180
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 318 TTTGGATATGACATTGGAATCTCAGGAGGAGTTACATCGATGGATGAGTTTCTTGAGGAG 377
Query 181 TTTTTCCATACGGTTTATGAGAAGAAGAAGCATGCTCATGAAAGTAATTACTGCAAATAT 240
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 378 TTTTTCCACACGGTTTATGAGAAGAAGAAGCAAGCTCATGAAAGTAATTACTGCAAATAT 437
Query 241 GATAATCAAGGATTAGCTGCTTTTACTTCTTCACTCTACTTAGCTGGTTTGGTTTCGACT 300
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 438 GATAATCAAGGCTTAGCTGCTTTCACTTCTTCACTCTACTTAGCTGGTTTGGTTTCGACT 497
Query 301 CTCGTGGCTTCACCCGTCACTAGGAACTATGGAAGGCGTGCAAGTATTGTTTGTGGTGGA 360
||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 498 CTCGTGGCTTCACCCATCACTAGGAACTACGGTAGGCGTGCGAGTATTGTTTGTGGTGGA 557
Query 361 ATCAGCTTTCTTATTGGATCTGCTTTGAATGCTGGAGCTGTGAACCTAGCTATGCTTCTT 420
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 558 ATCAGCTTTCTTATTGGATCTGGTTTGAATGCTGGAGCTGTGAACTTAGCTATGCTTCTT 617
Query 421 GCGGGACGGATCATGCTCGGTGTTGGCATTGGATTTGGAAATCAGGCAGTTCCTTTGTAT 480
|| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 618 GCCGGACGGATCATGCTTGGTGTTGGTATTGGATTTGGAAATCAGGCGGTTCCTTTGTAT 677
Query 481 TTATCAGAAGTGGCACCAACTCATCTGCGAGGCGGTTTAAACATGATGTTTCAGTTAGCT 540
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 678 TTATCAGAAGTGGCACCAACTCATCTACGAGGTGGTTTAAACATGATGTTTCAGCTAGCT 737
Query 541 ACAACTATTGGGATCTTTACGGCGAATATGGTCAATTATGGTACTCAACAACTTAAGCCT 600
|||||||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 738 ACAACTATCGGGATCTTTACAGCGAACATGGTTAATTACGGTACTCAACAGCTTAAGCCT 797
Query 601 TGGGGATGGAGACTCTCTCTTGGTTTGGCTGCTTTTCCAGCTCTGCTTATGACGCTTGGC 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 798 TGGGGATGGAGACTCTCTCTTGGTTTAGCTGCTTTTCCAGCTCTGCTTATGACGCTTGGC 857
Query 661 GGGTATTTCTTACCCGAAACTCCCAACAGTTTGGTCGAAAGAGGATTGACAGAGAGAGGT 720
||||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||
Sbjct 858 GGGTATTTCTTACCCGAGACACCAAACAGTTTGGTCGAAAGAGGATTAACAGAGAGAGGT 917
Query 721 CGACGTGTCTTAGTGAAACTAAGAGGGACGGAAAACGTCAATGCCGAGCTTCAAGACATG 780
||||| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 918 CGACGAGTCTTAGTGAAGCTAAGAGGAACAGAAAACGTCAACGCCGAGCTTCAAGACATG 977
Query 781 GTAGATGCGAGTGAGCTTGCGAATTCAATCAAACATCCATTCAGAAACATCCTGCAGAAA 840
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 978 GTAGATGCGAGTGAGCTTGCGAATTCCATCAAACATCCATTCAGAAACATCTTGCAGAAA 1037
Query 841 CGACATAGGCCTCAGCTAGTTATGGCGATTTGCATGCCAATGTTTCAGATCCTCACAGGG 900
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1038 CGACACAGGCCTCAGCTAGTTATGGCTATTTGCATGCCAATGTTTCAGATACTCACAGGG 1097
Query 901 ATAAACTCAATTCTCTTCTACGCGCCTGTTCTGTTCCAGACAATGGGATTTGGAGGAAAC 960
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1098 ATAAACTCCATTCTCTTCTACGCACCTGTTCTGTTCCAGACAATGGGGTTTGGAGGAAAC 1157
Query 961 GCATCTCTCTACTCATCAGCTTTAACAGGAGCTGTTCTTGTCCTATCAACATTTATTTCC 1020
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 GCATCTCTCTATTCATCAGCTTTAACAGGAGCTGTTCTTGTCCTATCAACATTTATTTCC 1217
Query 1021 ATAGGATTAGTGGACAGATTGGGAAGAAGAGCTCTTCTCATCACTGGAGGAATACAAATG 1080
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1218 ATAGGATTAGTAGACAGATTGGGACGAAGAGCTCTTCTCATAACTGGAGGAATACAAATG 1277
Query 1081 ATAATCTGTCAAGTCATAGTTGCAGTGATCTTGGGAGTGAAATTTGGAGACAACCAAGAG 1140
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1278 ATAATCTGTCAAGTCATAGTAGCAGTGATCTTAGGAGTGAAATTTGGAGACAACCAAGAG 1337
Query 1141 CTATCAAAAGGGTACTCAGTCATCGTAGTCGTCTTCATTTGCCTCTTTGTTATAGCATTC 1200
|||||||||||||||||||| ||||||||| ||||||| |||||||||||| |||| |||
Sbjct 1338 CTATCAAAAGGGTACTCAGTGATCGTAGTCATCTTCATCTGCCTCTTTGTTGTAGCGTTC 1397
Query 1201 GGATGGTCATGGGGTCCTCTCGGTTGGACCATACCGAGCGAAATCTTTCCGTTAGAGATT 1260
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 1398 GGATGGTCATGGGGTCCTCTAGGTTGGACCATACCTAGCGAAATCTTTCCGTTAGAGACT 1457
Query 1261 CGTTCAGCGGGGCAGAGTATCACGGTAGCCGTCAACCTCCTCTTCACTTTCATCATAGCT 1320
||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||
Sbjct 1458 CGTTCAGCGGGGCAGAGTATCACAGTAGCTGTAAATCTCCTCTTCACTTTCATCATAGCT 1517
Query 1321 CAAGCTTTCCTCGGTCTCCTCTGCGCGTTCAAGTTTGGAATCTTCCTCTTCTTTGCTGGT 1380
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1518 CAAGCTTTCCTTGGTCTCCTCTGTGCATTCAAGTTTGGAATCTTCCTCTTCTTTGCTGGT 1577
Query 1381 TGGGTCACAGTAATGACCATCTTTGTCTATTTCCTGTTGCCTGAAACCAAAGGAGTTCCA 1440
||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1578 TGGGTGACAGTAATGACTATCTTTGTGTATTTCCTGTTGCCTGAAACCAAAGGAGTTCCA 1637
Query 1441 ATAGAAGAGATGACACTCTTATGGAGTAAACATTGGTTCTGGAAAAAAGTATTACCTG-- 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 ATAGAAGAGATGACACTCTTATGGAGTAAACATTGGTTCTGGAAAAAAGTATTACCTGAT 1697
Query 1499 -CAACAAATCTTGAAGATGAGAGCAAGAATGAATC 1532
|||||||||||||||||||||||||||||| |||
Sbjct 1698 GCAACAAATCTTGAAGATGAGAGCAAGAATGTATC 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5