BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327641
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1480 0.0
> AT4G01460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:620759-622945 FORWARD LENGTH=1421
Length=1421
Score = 1480 bits (801), Expect = 0.0
Identities = 897/944 (95%), Gaps = 4/944 (0%)
Strand=Plus/Plus
Query 7 GGATTAATGAGATTTGGTGAACTAGGAGAACAATTTGGTCAGATTTCAGAAC-CTACAAT 65
||||| ||||| ||||||||| ||| ||| ||||||||||||||||||| || |||| ||
Sbjct 232 GGATTGATGAGTTTTGGTGAATTAGAAGACCAATTTGGTCAGATTTCAG-ACACTACTAT 290
Query 66 TGAAGAGAAGATCCCATTTCTGCAAATGCTTCAATGCATAGAACACCCTTATACAACAAC 125
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 291 GGAAGAGAAGATACCATTTCTGCAAATGCTTCAATGCATAGAACACCCTTTTACAACAAC 350
Query 126 AGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAATAGCTG 185
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 AGAACCAAATCAGTTTCTCCAATCACTTCTCCAGATCCAAACCCTAGAATCAAAGAGCTG 410
Query 186 TCTCACCCTTGAAACCACCATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGA 245
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCTCACCCTTGAAACAAACATCAAAAGAGATCCGGGTCAAACAGATGACCCGGAAAAGGA 470
Query 246 TCCAAGAACAGAGCCCGGAGCAGCAACGGTCaaagaaaagagaaaacggaaacgtacaag 305
|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 471 TCCAAGAACAGAAAACGGAGCAGTAACGGTCAAAGAAAAAAGAAAACGGAAACGTACAAG 530
Query 306 agctccaaagaacaaagatgaagttgaaaaacaaagGATGACTCACATTGCCGTCGAACG 365
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 531 AGCTCCAAAGAACAAAGACGAAGTTGAAAACCAAAGGATGACTCACATTGCCGTCGAACG 590
Query 366 TAATCGAAGACGACAAATGAACGAACACTTAAACTCTCTCCGATCTCTTATGCCTCCTTC 425
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 591 TAATCGAAGACGACAAATGAACGAACACTTAAACTCTCTCCGATCTCTCATGCCTCCTTC 650
Query 426 GTATATTCAACGGGGTGATCAAGCTTCGATTGTAGGAGGCGCAATAGATTTCATCAAGGA 485
|| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 651 GTTTCTTCAACGGGGTGACCAAGCTTCGATTGTAGGAGGGGCAATAGATTTCATCAAGGA 710
Query 486 ACTCGAGCAACTCTTGCAATCTCTAGAAGCTGAGAAACGAAACGATGGAACTAATGAAAC 545
||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 711 ACTAGAGCAACTCTTGCAATCTCTAGAAGCTGAGAAACGAAAGGATGGAACTGATGAAAC 770
Query 546 TCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCGTGCATGCACTAACTCTTCTGTTTC 605
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 771 TCCTAAAACGGCGTCGTGTTCTTCATCTTCGTCTCTTGCATGCACTAACTCTTCTATTTC 830
Query 606 TAGCGTCTCTACGACGTCGGAAGATGGATTTACGGCGAGATTCGGCGGCGGAGAGACGGC 665
|||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |
Sbjct 831 TAGCGTGTCTACGACGTCGGAAAATGGATTTACGGCGAGATTCGGCGGTGGAGATACGAC 890
Query 666 GGAAGTGGAAGCTACGGTGATACAGAACCATGTGAGCTTAAAAGTTCGGTGTAAGAGAGG 725
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AGAAGTGGAGGCTACGGTGATACAGAACCATGTGAGCTTAAAAGTTCGGTGTAAGAGAGG 950
Query 726 AAAAGGACAGATCTTGAAAGCTATCGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACA 785
|||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 951 AAAACGACAGATCTTAAAAGCTATTGTCTCGATTGAAGAACTAAAGCTTGCGATTCTACA 1010
Query 786 TCTCACTATCTCTTCTTC-TTATGACTTTGTCATCTACTCTTTTAATCTCAAGATAGAAG 844
|||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||
Sbjct 1011 TCTCACTATCTCTTCTTCCTT-TGACTTTGTCATCTACTCTTTCAATCTCAAGATGGAAG 1069
Query 845 ATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAACCGTTCATCAGATCTTCGAGC 904
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1070 ATGGTTGTAAATTAGGATCAGCAGATGAGATAGCGACAGCCGTTCATCAGATCTTCGAGC 1129
Query 905 AAATCAACGGTGAAGTGATGTGGTCAAATCTTAGTCGAACTTAG 948
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1130 AAATCAACGGTGAAGTCATGTGGTCAAATCTTAGTCGAACTTAG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5