BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327672
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01060.1 | Symbols: ETC3, CPL3 | CAPRICE-like MYB3 | chr4:46... 411 2e-114
> AT4G01060.1 | Symbols: ETC3, CPL3 | CAPRICE-like MYB3 | chr4:460531-461074
FORWARD LENGTH=344
Length=344
Score = 411 bits (222), Expect = 2e-114
Identities = 235/241 (98%), Gaps = 1/241 (0%)
Strand=Plus/Plus
Query 1 ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 ATGGATAACCATCGCAGGACTAAGCAACCCAAGACCAACTCCATCGTTACTTCTTCTTCT 63
Query 61 GAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 GAAGGAACAGAAGTGAGTAGTCTTGAGTGGGAAGTTGTGAACATGAGTCAAGAAGAAGAA 123
Query 121 GATTTGGTCTGTAGAATGCATAAGCTTGTCGGTGACAGGTGGGAATTGATAGCTGGGAGG 180
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 124 GATTTGGTCTCTCGAATGCATAAGCTTGTCGGTGACAGGTGGGAACTGATAGCTGGGAGG 183
Query 181 ATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGATGATGAAAA-TTGAAAAGTG 239
||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 184 ATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGGTCATGAAAAATTGAAAAGTG 243
Query 240 A 240
|
Sbjct 244 A 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10857833784
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5