BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg327738 Length=2436 Score E Sequences producing significant alignments: (Bits) Value AT4G00340.1 | Symbols: RLK4 | receptor-like protein kinase 4 | ... 1879 0.0 > AT4G00340.1 | Symbols: RLK4 | receptor-like protein kinase 4 | chr4:148814-151686 FORWARD LENGTH=2791 Length=2791 Score = 1879 bits (1017), Expect = 0.0 Identities = 1147/1211 (95%), Gaps = 4/1211 (0%) Strand=Plus/Plus Query 1228 GGAAACATCTCTAAATCCATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1287 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1393 GGAAACATCTCTAAGTCTATAATTATATTGTGCAGCGTTGTTGGGTCAATCTCAGTTCTT 1452 Query 1288 GGGATTACATTGTTGGTGCCATTGATTCTGTTGAAGAGGAGTCGGAAGAGGAAGAAGACG 1347 ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1453 GGGTTTACATTGTTAGTGCCATTGATTCTGTTGAAGAGGAGTCGAAAGAGGAAGAAGACT 1512 Query 1348 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAAT-TTGAAGGTCTTTTCTTTCAAGGA 1406 |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 1513 AGGAAACAAGACGAAGATGGGTTTGCTGTGTTGAATCTT-AAGGTATTTTCTTTCAAGGA 1571 Query 1407 GCTTCAAGCAGCTACCAATGGGTTTTCGGATAAGGTTGGACACGGTGGTTTTGGGGCAGT 1466 ||||||| |||||||||||||||| ||||||||||| |||||||| ||||||||||| || Sbjct 1572 GCTTCAATCAGCTACCAATGGGTTCTCGGATAAGGTCGGACACGGCGGTTTTGGGGCGGT 1631 Query 1467 -TTTCAAAGGAACATTACCGGGTTCTTCTACCTTTGTGGCCGTGAAACGCTTAGAAAGAC 1525 ||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||| Sbjct 1632 GTTT-AAGGGAACATTACCGGGTTCTTCTACATTCGTGGCTGTGAAACGCTTAGAAAGAC 1690 Query 1526 CTGGAAGCGGGGAGAGCGAGTTCCGGGCTGAGGTATGTACCATTGGCAACATTCAACATG 1585 |||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1691 CTGGAAGCGGGGAGAGTGAGTTCCGGGCAGAGGTATGCACCATTGGGAACATTCAACATG 1750 Query 1586 TCAATCTCGTTAGGCTTCGGGGTTTCTGTTCAGAGAATCTTCACAGACTTCTTGTCTACG 1645 ||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| | Sbjct 1751 TCAATCTCGTTAGGCTTAGAGGTTTCTGTTCAGAGAATCTTCATAGGCTTCTTGTCTATG 1810 Query 1646 ATTACATGCCACAAGGATCCCTGAGCACCTATTTGTCTAGAACAAGCCCCAAATTGCTAA 1705 |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| Sbjct 1811 ATTACATGCCACAAGGATCCTTGAGTTCCTATCTGTCTAGAACAAGCCCCAAATTGCTAA 1870 Query 1706 ACTGGGAGACCCGTTTTAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1765 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1871 GCTGGGAGACCCGTTTCAGGATCGCGTTAGGTACTGCCAAAGGGATCGCGTACTTGCATG 1930 Query 1766 AAGGATGCAGGGACTGTATTATTCACTGTGATATCAAGCCGGAGAACATTCTTTTGGACA 1825 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| Sbjct 1931 AAGGATGCAGGGACTGTATTATACACTGTGATATCAAACCGGAGAACATTCTTTTGGACA 1990 Query 1826 GCGATTACAACGCCAAAGTATCTGATTTTGGCTTGGCTAAGCTCCTTGGCCGTGACTTCA 1885 | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1991 GTGATTACAACGCCAAAGTGTCTGATTTTGGCTTGGCTAAGCTCCTTGGACGTGACTTCA 2050 Query 1886 GCAGAGTTCTAGCCACAATGAGAGGGACATGGGGCTACGTGGCTCCTGAATGGATATCAG 1945 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 2051 GCAGAGTTCTAGCCACGATGAGAGGGACATGGGGCTACGTGGCTCCCGAATGGATATCTG 2110 Query 1946 GTTTGCCCATCACAACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2005 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2111 GTTTGCCCATCACGACAAAAGCTGATGTGTATAGCTTTGGAATGACATTGCTCGAGCTGA 2170 Query 2006 TCGGTGGTCGAAGAAATGTCATTGTTAATAGCGATACACTTGGAGAGAAAGATACAGAAC 2065 |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 2171 TCGGTGGTAGAAGAAATGTCATTGTTAATAGCGATACACTGGGAGAGAAAGAGACAGAAC 2230 Query 2066 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAAATCATACAAGGAAATGTGGACT 2125 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 2231 CAGAGAAATGGTTCTTTCCGCCATGGGCAGCGCGTGAGATCATACAAGGCAATGTGGACT 2290 Query 2126 CTGTGGTCGACTCTAGACTCAACCGAGAATATAACATTGAAGAGGTGACGAGGATGGCAA 2185 ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 2291 CTGTGGTTGACTCTAGACTCAACGGAGAATATAACACTGAAGAGGTGACGAGGATGGCAA 2350 Query 2186 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCGATGGGAACGGTAG 2245 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2351 CGGTGGCGATATGGTGCATACAAGACAATGAAGAGATAAGGCCAGCAATGGGAACGGTAG 2410 Query 2246 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACAGTTCCTCCACCGCCTAAATTGATACAAG 2305 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2411 TGAAGATGCTTGAAGGAGTTGTGGAGGTGACGGTTCCTCCACCGCCTAAATTAATACAAG 2470 Query 2306 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGTGGCACAACCTGTAGCGAAAGTCGTG 2365 |||||||||||||||||||||||||||||||||| ||||||| |||||| ||| | | || Sbjct 2471 CTCTTGTCTCCGGCGATTCATACCGAGGAGTGAGCGGCACAAGCTGTAGTGAAGGCCATG 2530 Query 2366 GCTGTTCGGATCTCAACACTGGATTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2425 |||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 2531 GCTGTTCGGATCTCAATACAGGTTTGTCTAGCCCTGGCTCACGGTCGTCTTTTGGTAGAC 2590 Query 2426 CTTCTCCTTGA 2436 ||||||||||| Sbjct 2591 CTTCTCCTTGA 2601 Score = 1808 bits (979), Expect = 0.0 Identities = 1130/1202 (94%), Gaps = 14/1202 (1%) Strand=Plus/Plus Query 22 cttcatcttcttcttcttcttctcctcttccttcttcctccactatcttcttctGTGGAA 81 ||| |||||| ||||||||||||||||||||||| | ||||| | | | ||||| | Sbjct 158 CTT-ATCTTCCTCTTCTTCTTCTCCTCTTCCTTC-T--TCCACCA-C--CATCTGT--AC 208 Query 82 AACAACAAAGTTATCATCAAAGGAAACCATACGATTCTCAGCTTCAAAGCTATTTTCCGG 141 || | |||||||||||||||||||||||| || ||||| || |||||||||||||||||| Sbjct 209 AA-AGCAAAGTTATCATCAAAGGAAACCAAACCATTCTGAGTTTCAAAGCTATTTTCCGG 267 Query 142 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTATTTGGGTATCTCTTATGCT 201 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 268 CTTGGTTTCTTCAGCACCACCAATGGTTCCTCCAATTGGTACTTGGGTATCTCTTACGCT 327 Query 202 TCCATGCCTACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCCGATCCT 261 || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 328 TCTATGCCAACTCCCACCCACGTTTGGGTCGCCAATCGAATCCGACCCGTTTCGGATCCT 387 Query 262 GACTCTTCCACTCTCGAGCTCACCTCCACCGGACACCTAATCGTCAG-AAACTCCCGTGA 320 ||||||||||||||||||||||||||||||||| ||||||||||||| || || |||||| Sbjct 388 GACTCTTCCACTCTCGAGCTCACCTCCACCGGATACCTAATCGTCAGTAACCT-CCGTGA 446 Query 321 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 447 CGGCGTCGTTTGGCAGACGGATAACAAACAACCCGGAACCGATTTCCGGTTCTCTGAAAC 506 Query 381 CGGGAATCTGATTTTGATCAACGACGACGGCTCTCCGGTTTGGCAGAGCTTTGATAATCC 440 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 507 CGGGAATCTGATTTTGATCAACGACGACGGTTCTCCGGTTTGGCAGAGCTTTGACAATCC 566 Query 441 GACCGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACGGCTATGACTTCGTGGCG 500 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 567 GACTGACACGTGGCTTCCGGGGATGAATGTCACCGGTCTAACAGCTATGACTTCGTGGCG 626 Query 501 GACTCTGTTCGATCCTTCGCCGGGATTTTACTCCCTGAGACTGAGTCCAGGCTTCAACGA 560 || ||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||| Sbjct 627 GAGTCTCTTCGATCCTTCGCCGGGGTTTTACTCTCTGAGACTGAGTCCAAGCTTCAACGA 686 Query 561 GTTCCAGCTTGTTTACAAAGGAGCCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 620 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 687 GTTCCAGCTTGTTTACAAAGGAACCACACCGTATTGGTCCACCGGAAATTGGACCGGAGA 746 Query 621 TGCCTTCGTCGGCGTTCCAGAGATGACCATTCCATACATCTACAGGTTCCATTTCGTTAA 680 ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 747 AGCCTTCGTCGGCGTTCCGGAAATGACCATTCCTTACATCTACAGGTTCCATTTCGTTAA 806 Query 681 CCCTTACACTCCCTCGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACGCCATTTCCGA 740 ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 807 CCCTTACACTCCCACGGCGTCGTTTTGGTACATCGTCCCACCGTTGGACTCCGTTTCCGA 866 Query 741 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 867 GCCACGGCTGACGCGGTTCATGGTCGGCGCCAACGGCCAGCTGAAGCAGTACACTTGGGA 926 Query 801 CCCACAGACGCAGAGCTGGAACATGTTCTGGTTTCAGCCGGAGGGTCCGTGCCGCGTTTA 860 |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| Sbjct 927 TCCACAGACGCAGAGCTGGAACATGTTCTGGTTGCAGCCGGAGGATCCTTGCCGCGTTTA 986 Query 861 CAGTCTCTGTGGTCAATTAGGGTTTTGCAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 920 || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 987 CAATCTCTGTGGTCAATTAGGGTTTTGTAGCAGCGAATTGCTCAAGCCCTGTGCTTGCAT 1046 Query 921 CCGCGGTTTCCGACCTAAGAACGACGACGCGTGGAGATCTGATGATTACAGCGACGGATG 980 |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1047 CCGCGGTTTCCGGCCTAGGAACGACGCCGCGTGGAGATCTGATGATTACAGCGACGGATG 1106 Query 981 CCGCCGTGAAAATGGTGATTCCGGCGAAAAGAGTGATACTTTTGAGGCGGTTGGTGATCT 1040 |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1107 CCGCCGTGAAAACGGTGATTCCGGCGAAAAGAGTGATACTTTTGAAGCCGTTGGTGATCT 1166 Query 1041 GCGGTACGACGGTGATGTGAAGATGTCGCGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1100 || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1167 ACGCTACGATGGTGATGTGAAGATGTCACGGTTGCAGGTAAGCAAGAGCTCTTGCGCCAA 1226 Query 1101 AACCTGCTTGGGAAACTCTTCTTGTGTTGGTTTTTATCATAACGAGAACTCGAATCTCTG 1160 ||| ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 1227 AACTTGCTTAGGAAACTCTTCTTGTGTTGGTTTTTATCATAAGGAGAAGTCTAATCTCTG 1286 Query 1161 CAAAATTCTACTCGAGTCGCCGA-TAAACCTGAAGAATTCGAGCTCCTGGACTGGAATTA 1219 ||||||| ||||||||||||||| ||| | |||||||||||||||| ||||||||| ||| Sbjct 1287 CAAAATTTTACTCGAGTCGCCGAATAATC-TGAAGAATTCGAGCTCGTGGACTGGAGTTA 1345 Query 1220 GT 1221 || Sbjct 1346 GT 1347 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 120983313450 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5