BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327886
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 446 1e-124
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 252 2e-66
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 446 bits (241), Expect = 1e-124
Identities = 273/289 (94%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 1 ATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGATGCCGTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 369 ATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCTGTT 428
Query 61 TCAGGTTCCGCAGCTAGAATCGGTTGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCGTC 120
||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 429 TCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTAGTC 488
Query 121 GATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTTCGCGTCACGGATCTCGTC 180
|| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 489 GACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACCGATCTCGTC 548
Query 181 CGTACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCTTGAAGATCGACCGTCCGGTGAA 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 549 CGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAA 608
Query 241 GAGAATCTGGACGAATTGGCGAACGAGGTTGAAGTTTTGATGAAAGAAG 289
||||||||||||||||||||||| || ||||| ||| ||||||||||||
Sbjct 609 GAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGATGAAAGAAG 657
Score = 187 bits (101), Expect = 7e-47
Identities = 113/119 (95%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 289 GAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCGTTGGTAGC 348
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 699 GAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGC 758
Query 349 ACGTTTGAAGGAGCTCCAATGGAGCAGCAAGCGTTGCTGGAGCTTGAAGACACGGCGGC 407
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 759 ACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 252 bits (136), Expect = 2e-66
Identities = 244/295 (83%), Gaps = 12/295 (4%)
Strand=Plus/Plus
Query 1 ATGATGCAAACGCTTCTCCAATCCGATCTCA-GATTCGGCGTTGTCTACTCCGATGCCGT 59
|||||||| ||||| |||||||| ||||| | |||||||||| || ||||||||| ||||
Sbjct 395 ATGATGCACACGCTCCTCCAATCTGATCT-ACGATTCGGCGTAGTTTACTCCGATTCCGT 453
Query 60 TTCAGGTTCCGCAGCTAGAA-TCGGTTGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCG 118
|| || ||||| || |||| | || || || |||||| ||||||| |||||||||||||
Sbjct 454 CTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAGTCGTGAAACACGAGCGTCTCG 512
Query 119 TCGATGATCGATTCTT-CTTAATCTGTAAAGGTCAGGAACGATTTCGCGTCACGGATCTC 177
|||||||||||||||| || | |||| |||||||| |||||||| || |||||| || ||
Sbjct 513 TCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGAACGATTCCGAGTCACGAATGTC 571
Query 178 GTCCGTACGAAACCTTACCTCGTCGC-GAAGGTGACGTGGCTTGAAGATCGACCGTCCGG 236
|| ||||||||||| ||||| |||| |||| | ||||||||||||||||| || |||||
Sbjct 572 GTTCGTACGAAACCCTACCTTGTCGGAGAAG-TCACGTGGCTTGAAGATCGTCCTTCCGG 630
Query 237 TGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAAGTTTTGATGAAAGAAG 289
|||||| ||||| || || || || || || || |||||| | ||||||||||
Sbjct 631 TGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAAGTTCTAATGAAAGAAG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20660044839
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5