BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327981
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1954 0.0
AT4G37925.1 | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoq... 907 0.0
> AT4G37920.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, chloroplast,
chloroplast envelope; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G36320.1); Has 123 Blast hits
to 120 proteins in 40 species: Archae - 2; Bacteria - 11;
Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes
- 17 (source: NCBI BLink). | chr4:17828433-17830465
REVERSE LENGTH=1537
Length=1537
Score = 1954 bits (1058), Expect = 0.0
Identities = 1220/1299 (94%), Gaps = 7/1299 (1%)
Strand=Plus/Plus
Query 639 TGAGGGACAAAAAATGGCGAATTTACTGGAAACATCAATCTTCTTCTCCTCGGCTGATAA 698
||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 136 TGAGGGAGAAAAAATGGCGAATTTACTGGAAACATCAATCTTTTTCTCCTCTGCTGATAA 195
Query 699 ATTAATTTCATTCTCGTCTCATAATTCTCAAACCCATCTTCTCCCTTTCTCTGCTTTCAT 758
|||| | || ||| || || | |||||||||||||||| |||||||||||||||||||||
Sbjct 196 ATTACTGTCTTTCCCGCCTAAGAATTCTCAAACCCATCATCTCCCTTTCTCTGCTTTCAT 255
Query 759 CAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTTCCGACACTGTCAC 818
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 256 CAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTACCGACACTGTCAC 315
Query 819 TTACAGTAGCATC-ACCAGTACGGAGGTAAAAAGCTCTGTTGAGGATCCTATGGAAGTTG 877
||||| | ||| | || ||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 316 TTACAATGGCA-CTACAAGTGCGGAAGTAAAAAGCTCTGTTGAGGATCCAATGGAAGTTG 374
Query 878 AGGTTGCTCAAGGCTACACTATGGCTCAGTTCTGTGACAAGATCATTGATCtttttttGA 937
|||||||| |||| ||||||||||||||||| ||||||||||| |||||||| || ||||
Sbjct 375 AGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGATTATTGATCTCTTCTTGA 434
Query 938 ATGAGAAACCTAGAGTTAAACAATGGAAGACTTATTTGGTTTTAAGAGATGAATGGAACA 997
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 435 ATGAGAAACCTAAAGTTAAACAATGGAAGACGTATTTGGTTTTAAGAGATGAATGGAACA 494
Query 998 AGTACAGTGTTAATTTCTATAGGCGTTGCAGAATCCGAGCTGATTCCGAAACTGATCCTA 1057
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 495 AGTACAGTGTTAATTTCTATAAGCGTTGCAGAATCCGAGCTGATACCGAAACTGATCCTA 554
Query 1058 TATTGAAGCAGAAGCTGTTATCTTTGGAAAGTAAAGTCAAGAAGATAGATGAGGAAATGG 1117
||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 555 TATTGAAGCAGAAACTGGTATCTTTGGAAAGTAAAGTCAAGAAGATAGATAAGGAAATGG 614
Query 1118 AGAAGCACAATGACCTTTTGAAGGAGATTCAAGAAAACCCGACTGACATAAACGCAATCG 1177
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 615 AGAAACACAATGACCTTTTGAAGGAGATTCAAGAAAACCCAACAGACATAAACGCAATCG 674
Query 1178 CTGCCAAGAGACGTAGAGACTTCACAGGAGAGTTTTTCCGCTATGTTGCTTTGTTATCAG 1237
||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 675 CTGCCAAGAGACGCAGAGACTTTACGGGAGAGTTTTTCCGCTATGTTACTTTGTTATCAG 734
Query 1238 AAACTCTTGATGGCTTAGAAGACCGAGATGCTGTCGCAAGGCTTGCAACTAGATGTTTAT 1297
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 735 AAACTCTTGATGGCTTGGAAGACCGAGATGCTGTTGCGAGGCTTGCAACTAGATGTTTAT 794
Query 1298 CTGCTGTGAGTGCTTATGACAATACATTGGAGAGTGTTGAGACTCTAGATGCTGCTCAAG 1357
|||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||
Sbjct 795 CTGCTGTGAGTGCTTATGACAACACGTTGGAGAGTGTTGAGACTCTAGATACTGCTCAAG 854
Query 1358 CAAAGTTTGATGATATTTTAAACTCTCCATCCGTGGATGCCGCTTGCGAAAAGATCAGAA 1417
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 855 CAAAGTTTGAAGATATTTTAAACTCTCCATCCGTGGATTCTGCTTGCGAAAAGATCAGAA 914
Query 1418 GTTTAGCCAAGTCAAAGGAGCTAGATTCTTCATTGATCTTATTAATAAACAGTGCTTACG 1477
||||||||||| |||||||||| ||||| |||||||||||||| || |||||||| ||||
Sbjct 915 GTTTAGCCAAGGCAAAGGAGCTTGATTCCTCATTGATCTTATTGATCAACAGTGCATACG 974
Query 1478 CTGCAGCTAAAGAGTCTCAAACCGTTACAAACGAGGCTAAAGACGTAATGTATCATTTAT 1537
|||| || |||||||||||||| ||||| ||||||||||||||| |||||||||||||||
Sbjct 975 CTGCTGCAAAAGAGTCTCAAACTGTTACGAACGAGGCTAAAGACATAATGTATCATTTAT 1034
Query 1538 ACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGT 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 ACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGT 1094
Query 1598 ACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCTCTAGCAACAGCATTCTCTC 1657
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1095 ACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCCCTAGCTACAGCATTCTCTC 1154
Query 1658 CTGGCGATGACCATGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGC 1717
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 CTGGTGATGACCACGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGC 1214
Query 1718 ATAAGTGGATAAAGATAATGCTTGATGCATACCATCTCAACAAAGAAGAAACTGACATTA 1777
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1215 ATAAGTGGATAAAGATAATGCTTGATGCTTACCATCTCAACAAAGAAGAAACAGACATTA 1274
Query 1778 AAGAAGCTAAACAGATGAGCCAACCAATCGTGATTCAGCGGCTTTTCATCCTCAAGGACA 1837
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1275 AAGAAGCTAAACAGATGAGCCAACCTATCGTTATTCAGCGGCTTTTCATTCTCAAGGACA 1334
Query 1838 CGATCGAAGATGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAAATCCAAAGAAGG 1897
| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1335 CTATCGAAGACGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAACTCCAAAGAAGG 1394
Query 1898 AAGAAGA---TAC-ATCTGTTGAAGAATTTTTGAACTGA 1932
||||||| ||| | || ||||||| ||||||||||||
Sbjct 1395 AAGAAGAAGATACGA-CTATTGAAGATTTTTTGAACTGA 1432
> AT4G37925.1 | Symbols: NDH-M | subunit NDH-M of NAD(P)H:plastoquinone
dehydrogenase complex | chr4:17830562-17831554 REVERSE
LENGTH=909
Length=909
Score = 907 bits (491), Expect = 0.0
Identities = 594/642 (93%), Gaps = 13/642 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGCATCATTCTCTTACACTGCCTACACCAAGCTTTCTCTATTACATCCTCCCATG 60
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| | |||
Sbjct 70 ATGGTTGCAGCATTCTCTTACACTGCCTGCACCAAGCTTTCTCTATTACATCCTTCTATG 129
Query 61 GCTGCTCAAATCCGACCAAGAACAACACAGAAGACGTTCGTAGTGACAAATCCTGAACAA 120
| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||
Sbjct 130 GTTGCTCAAATCCGACCAAGAACAACACAAAAGGCGTTCGTGGTGACAAATCCGGAACAA 189
Query 121 GACAGTACTCTGGAGGTACAAGAAACAGAGCCAATCAAAGAAGAGCAATCAACAGAGAAG 180
||||||||||| || ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 190 GACAGTACTCTTGAAGTACAAGAAACAGAGACACTCAAAGAAGAGCAATCAACAGAGAAG 249
Query 181 ATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAACTAAACGTGAAGAGCAAA 240
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 250 ATGAAGAAGCAGCCAACACCATTGAGACCAGTGGAGAAACAGCTGAACGTGAAGAGCAAG 309
Query 241 GGTATGGGCCAGTTTGGTGGTCAGTGGCTAAGCAGTGTCACACGTCACGTTAGGATCTAC 300
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGTATGGGCGATTTTGGTGGTCAGTGGCTAAGCAGTGTCACACGTCACGTTAGGATCTAC 369
Query 301 GCTGCTTATATCGACCCCGAGACTTGTGAGTTTGACCAGTCACAAATGGATAAACTCACT 360
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GCTGCTTATATTGATCCAGAGACTTGTGAGTTTGACCAGTCACAAATGGATAAACTCACT 429
Query 361 TTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAAAGCTGTAACAAGGTCTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 TTGATTCTTGATCCTACTGAAGAATTTGTGTGGGATGATGAAAGCTGTAACAAGGTCTAT 489
Query 421 TCTTATTTCCAAGAACTCGTCGATCACTACGAGACTCCTTCAAGAAGACC-TTA-CAATA 478
||||||||||||||||||||||||||||||||| | | | || ||| | |
Sbjct 490 TCTTATTTCCAAGAACTCGTCGATCACTACGAGGG------A-GCA--CCATTAACGG-A 539
Query 479 TTTACACATTAAGATTGATAGGATCAGACGTAGAACATTACATAAGGAAAATGTTATTTG 538
| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct 540 GT-ACACATTGAGATTGATAGGATCGGACGTAGAACATTACATAAGGAAGATGTTGTTCG 598
Query 539 ATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAACTTCAGTATGGGAAAGCCTC 598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 ATGGAGAAATACAATACAATATGGATGCAAGAGTTCTTAATTTCAGTATGGGAAAGCCTC 658
Query 599 GTGTTCAATTCAATACTAGTAACATTGAAGGTGGTGGAGATG 640
|||| ||||||||||| |||||||||||||||||||||||||
Sbjct 659 GTGTACAATTCAATACCAGTAACATTGAAGGTGGTGGAGATG 700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95682238770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5