BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg328325

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34190.1 | Symbols: SEP1 | stress enhanced protein 1 | chr4:...   634    0.0  


> AT4G34190.1 | Symbols: SEP1 | stress enhanced protein 1 | chr4:16372388-16373626 
REVERSE LENGTH=774
Length=774

 Score =  634 bits (343),  Expect = 0.0
 Identities = 414/444 (93%), Gaps = 21/444 (5%)
 Strand=Plus/Plus

Query  1    ATGGCCTTATCTCAAGTCTCTGCGTCTCGCGCCTTTTCTCTTCCCAATTC---TG-----  52
            ||||||||||||||||| |||||||||| |||||||||||||||||||||   ||     
Sbjct  116  ATGGCCTTATCTCAAGTGTCTGCGTCTCTCGCCTTTTCTCTTCCCAATTCTGGTGCCCTA  175

Query  53   --G-T-------ATCACAAACCCAAGTTCTACTTGTCGGGTTCATGTTCCGCAACTTGCT  102
              | |       ||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  176  AAGCTAGCCACAATCACAAACCCAACTTCTACATGTCGGGTTCATGTTCCGCAACTTGCT  235

Query  103  GGAATCCGATCCACCTTCGCTTCTGGTTCTCCTCTCTTGCCATTGAAGTTGAGTATGACT  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  236  GGAATCCGATCCACCTTCGCTTCTGGTTCTCCTCTCTTGCCATTGAAGTTGAGTATGACC  295

Query  163  CGTAGAGGAGGAAGAAACAGAGCAGCATCAGTTTCAATTAGAAGTGAGCAAAGTACAGAA  222
            ||||||||| |  |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  296  CGTAGAGGA-G--GAAACAGAGCAGCATCAGTTTCCATAAGAAGTGAGCAAAGTACAGAA  352

Query  223  GGAAGCAGTGGTTTGGACATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCC  282
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  GGAAGCAGTGGTTTGGATATATGGCTTGGTCGTGGCGCCATGGTTGGTTTTGCAGTTGCC  412

Query  283  ATTACTGTTGAGATTTCAACTGGAAAAGGACTTCTTGAGAATTTTGGAGTAGCAAGTCCA  342
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  413  ATTACTGTTGAGATTTCCACTGGAAAAGGACTTCTTGAGAATTTTGGAGTAGCAAGTCCA  472

Query  343  TTGCCTACGGTTGCTTTAGCTGTTACAGCATTGGTTGGTGTTCTAGCTGCGGTTTTCATC  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  473  TTGCCTACGGTTGCTTTAGCTGTTACAGCATTGGTTGGTGTTCTAGCTGCGGTTTTCATC  532

Query  403  TTCCAATCTTCTTCTAAAAACTGA  426
            ||||||||||||||||||||||||
Sbjct  533  TTCCAATCTTCTTCTAAAAACTGA  556



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5