BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328472
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32610.1 | Symbols: | copper ion binding | chr4:15728143-15... 1393 0.0
AT4G32605.1 | Symbols: | Mitochondrial glycoprotein family pro... 1129 0.0
AT2G25670.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 588 6e-167
> AT4G32610.1 | Symbols: | copper ion binding | chr4:15728143-15730356
REVERSE LENGTH=1640
Length=1640
Score = 1393 bits (754), Expect = 0.0
Identities = 881/940 (94%), Gaps = 17/940 (2%)
Strand=Plus/Plus
Query 1 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTG 519
Query 61 TTTGCTGCTTTGGATACTTTGAGGAAGAAGAAGAAGTCAGATAAGGCTGGTAAGAGCAAA 120
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 520 TTTGCTGCTTTGGATACTTCGAGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGAGCAAA 579
Query 121 GCTTCCTCTAAGGGACAAGTTTCACAAAAGGAGCCTGAGCCACAGGTCTTCTGGGCACCT 180
|||||||||||| || ||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 580 GCTTCCTCTAAGAGAGAAGATTCACAGAAGGAGCCTGAGCCACAGGTTTTCTGGGCACCT 639
Query 181 ACGCCTCTCAAAGCAAAGGCTTGGGCCGATATCGATAGCGATGATGAAGATGACGACTAT 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 640 ACGCCTCTCAAAGCAAAGGCTTGGGCTGATATCGATAGCGATGATGAAGATGATGATTAT 699
Query 241 TACGCTACCTCTGCTCCACCTCAGTCCGTTTGGAGCACTTCTGAAGCCTCCCATTCCGAT 300
||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 700 TACGCTACCACTGCTCCACCTCAGTCCCTGTGGAGCACTTCTGAAGCCTCCCATTCAGAT 759
Query 301 GCTAAAGACGTTCACGCTGAGGAAAGTGAAAGCGAAGAAGACACTCTTGATGAAGGAGAT 360
||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 760 GCTAAAGACGTTCCCGCTGAGGAAATTGAAAGCGAAGAAGACACTCTTGATGATGGAGAT 819
Query 361 GATGACGATGTGGAGGAAGAGCAGGAGCAGGGAACAGAGACA---GTTCATCCAGAAGCA 417
||||| |||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 820 GATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGTTCATCCAGAAGCA 879
Query 418 GAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCCTGCACCTCCTAAGGAGGCAGAGAGGCAA 477
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 880 GAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCGTGCTCCTCCTAAGGAGGCAGAGAGGCAA 939
Query 478 CTGTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTCGAGGCTTTGTTAGCAGAT 537
|| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 940 CTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAGGCTTTGCTAGCAGAT 999
Query 538 TTTGGAGTCGCACCCAAAGATGAGAATGGTCATA-AAGACTCTCaagataaggaagagaa 596
|||||||| ||| ||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 1000 TTTGGAGTTGCAACCAAAGATGAGAATGGTCA-ACAAGACTCTCAAGATAAGGGGGAGAA 1058
Query 597 gaaagaagtgaatgatgagggagagaagagggagaacacaaccggagaaTCAAAGGCCTC 656
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1059 GAAAGAAGTGAATGATGAGGGAGAGAAGAAGGAGAACACAACCGGAGAATCAAAGGCCTC 1118
Query 657 aaagaagaagaaaaagaaggataaacagaaagagctaaaagaa-----g--tgaag--a- 706
||||||||||||||||||||| |||||||| |||||||||||| | ||||| |
Sbjct 1119 AAAGAAGAAGAAAAAGAAGGACAAACAGAAGGAGCTAAAAGAATCCCAGAGTGAAGTGAA 1178
Query 707 G--CAACTCAGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATTGA 764
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1179 GAGCAACTCGGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATCGA 1238
Query 765 TGTCAAAGAACGTCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAAGAGGT 824
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1239 CGTCAAAGAACGGCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGT 1298
Query 825 GGATGGTGCCTCAACAGCCGCCGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGC 884
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TGATGGTGCTTCAACAGCTGCTGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGC 1358
Query 885 GGCgaagaaaaaagaaaagaaaaaCTACAATCAGCAACCT 924
|||||||||||||||||||||||||||||||||||||||
Sbjct 1359 AGCGAAGAAAAAAGAAAAGAAAAACTACAATCAGCAACCT 1398
> AT4G32605.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr4:15726271-15727947 REVERSE LENGTH=925
Length=925
Score = 1129 bits (611), Expect = 0.0
Identities = 692/731 (95%), Gaps = 6/731 (1%)
Strand=Plus/Plus
Query 925 ACAATTCGCCGTGTTGC-TG---CTCTCAACGACGGAGAAGTAGAAATGTGGAGAAGAGT 980
|||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 38 ACAATTCGTCGTGTTGCTTGCTACTCTCGACGACGGAGAAGTAGAAATGTGGAGAAGAGT 97
Query 981 GATCGGAAATGTGGCCGTCCGGCGTCAGTTACAGCGAGCGCTATCCAGTAAATCCGGTGG 1040
|||||||||||| |||||||||| ||| ||||||||||||||||| |||||| |||||||
Sbjct 98 GATCGGAAATGTCGCCGTCCGGCATCAATTACAGCGAGCGCTATCTAGTAAAGCCGGTGG 157
Query 1041 AAGTGGAAAGAGCGGCAACGTTTCAGCTGCAGTGGATTCGATGCTTCTGCGTTCCCTTAA 1100
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 158 AAGTGGAAAGAGCGCCAACGTTTCAGCTGCAGTGGATTCGATGCTTCTGCGTTCCCTCAA 217
Query 1101 GGAACATTATC-TCGAAGTTTCTAAGATGACACCTCCTCCGAAAGTGAGTCCTCCTTCAC 1159
||||||||| | | || |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 218 GGAACATTA-CTTAGAGGTTTCTAAGATGACTCCTCCTCCGAAAGTGAGTCCTCCGTCAC 276
Query 1160 CATTTGAGATTGTGAAAGGGTCGCTTGAAGGAACTACTAGTGCTGTTCTGAAGAAATCTG 1219
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 277 CATTTGAGATTGTGAAAGGGTCGCTTGAAGGAAGTACTGGTGCTGTTCTGAAGAAATCTG 336
Query 1220 TTGGAAATGAAGAGATCAGTCTTTTCGTTATGCGGTTGGCTCACGGAGGTGATGAAGAAG 1279
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 337 TTGGAAATGAAGAGATCAATCTTTTCGTTATGCGCTTGGCTCACGGAGGTGATGAAGAAG 396
Query 1280 ATGATGATGGGATCAACCAATTGTTCCTCCATGTGGCTGTATCAAAGCCAAATCAGGCTG 1339
| |||| |||||||||||| |||||||| ||||| ||||||||||||||||||||| |||
Sbjct 397 ACGATGGTGGGATCAACCAGTTGTTCCTTCATGTTGCTGTATCAAAGCCAAATCAGCCTG 456
Query 1340 ATTCTTTGCATTTCCTTTGCGGTCTTTACCCTGATGCTTTGGGTATTCATTCTGTTTCCA 1399
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 457 ATTCTTTGCATTTCCTTTGTGGCCTTTACCCTGATGCATTGGGTATTCATTCTGTTTCCA 516
Query 1400 TGAGGCCTAAACTCGAGGATTTGGAGATGTCTGATGATCCTACTCAATACACTGGCCCTT 1459
||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 517 TGAGGCCAAAACTTGAGGCTTTGGAGATGTCTGATGATCCTACTCAATACACAGGCCCTT 576
Query 1460 CTTTTGAAGAGCTCGATGAGAAGATGAGAGATGTATTCCATGGATACCTAGAGGAACGAG 1519
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 577 CTTTTGAAGAGCTCGATGAGAAGATGAGAGATGTATTCCATGGATTCCTAGAGGAACGAG 636
Query 1520 GTGTGAACGAGAGTCTCTTCCCGTTTCTTCAGGCATGGCTCTATGTAAAGGATCACCGTA 1579
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 637 GTGTGAACGAGAGTCTCTTCCCCTTTCTTCAGGCATGGCTCTATGTAAAGGATCACCGTA 696
Query 1580 ACCTACTGCGATGGTTCAAATCAGTTGGCACGTTTGTTCATGAAAACCCATCTGCAGAAA 1639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 ACCTACTGCGATGGTTCAAATCAGTTGGCACGTTTGTTCATGAAAACCCATCTGCAGAAA 756
Query 1640 ACACCGCTTAG 1650
||||||| |||
Sbjct 757 ACACCGCCTAG 767
> AT2G25670.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast
hits to 26928 proteins in 1799 species: Archae - 86; Bacteria
- 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931;
Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink).
| chr2:10928664-10931062 REVERSE LENGTH=1690
Length=1690
Score = 588 bits (318), Expect = 6e-167
Identities = 767/973 (79%), Gaps = 74/973 (8%)
Strand=Plus/Plus
Query 1 ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGC-CGATTCAGAACACCAACTT 59
|||| ||| |||||||||||||||||||| |||||||| | |||| |||| ||| || ||
Sbjct 336 ATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGAT-CACGATCCAGAGCACTAATTT 394
Query 60 GTTTGCTGCTTTGGATACTTTG-AGGAAGAAGAAGAAGTCAGATAAGGCTGGTAAGAGCA 118
|||||| || ||||| || | | | ||||||||||||||| || ||||| || |||||||
Sbjct 395 GTTTGCAGCATTGGACAC-TCGTAAGAAGAAGAAGAAGTCTGACAAGGCAGGGAAGAGCA 453
Query 119 AAGCTTCCTCTAAGGGACAAGTTTCACAAAAGGAGCCTGAGCCACAGGTCT-TCTGGGCA 177
||| || |||||| || || || | |||||||||||||| ||||||| | |||||
Sbjct 454 AAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTAT-TGGGCT 512
Query 178 CCTACGCCTCTCAAAGCAAAGGCTTGGGCCGATATCGATAG-CGATGATGAAGATGACGA 236
||||||||| | |||| ||| ||||||| ||||| ||| | || || || ||||| ||
Sbjct 513 CCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGAT-GATGAAGACGACGATGATGA 571
Query 237 CTATTACGCTACCTCTGCTCCACCTCAGTCCGTTTGGAGCACTTCTGAAGCC-TCCCATT 295
|||||| || ||| ||||||| |||||||| | |||||| |||||| ||| ||||||
Sbjct 572 CTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTTCT-CTGCCTTCCCATA 630
Query 296 CCGATGCTAAAGACGTTCACGCTGAGGAAAGTGAAAGCGAAGAAGACACTCTTGATGAAG 355
| ||| | ||||||||||| | ||||||||||||||| || ||||| | ||||||||||
Sbjct 631 CTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAGATATTCTTGATGAA- 689
Query 356 GAGATGATGACGATGTGGAGGAAGAGCAGGAGCAGGGAACAGA-G-ACA-GTTCATCCAG 412
| | |||||| |||||||||||||||||||| |||| |||||| | ||| |||||| |
Sbjct 690 G-G-TGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGTTCAT-C-- 744
Query 413 AAGCAGAGCCTGAGGTGAA-AAAGGCTCCTGAAGTTCCTGCACCTCCTAAGGAGGCAGAG 471
|||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 745 ---CAGAGCCTGAGGTGAAGAAA-GCTCCTGAAGTTCCTGCACCTCCTAAAGAGGCAGAG 800
Query 472 AGGCAACTGTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTCGAGGCTTTGTTA 531
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 801 AGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAAGCTTTGTTG 860
Query 532 GCAGATTTTGGAGTCGCACCCAAAGATGAG-AATGGTCATAAAG-ACTCTCaagataa-g 588
|| ||||||||||| || ||||| || || ||||| | || || | |||||||| |
Sbjct 861 GCTGATTTTGGAGTTGCCCCCAAGGA-GAACAATGGCC-TAGAGGAATCTCAAGAGGCTG 918
Query 589 ga-a-gagaagaaagaag-tg--aatg-atgagggagagaagagggagaa--ca-caacc 639
|| | || |||||||||| || |||| | ||||||||||||| |||||| || ||
Sbjct 919 GACAAGAAAAGAAAGAAGATGTCAATGGA-GAGGGAGAGAAGAAGGAGAATGCAGCAGGT 977
Query 640 ggagaaTCAAAGGCCTCaaagaagaagaaaaagaaggataaacagaaagagctaaaagaa 699
|| || |||||||| ||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct 978 GGGGAGTCAAAGGCATCAAAAAAGAAGAAAAAGAAGGATAAGCAGAAGGAGGTAAAAGAA 1037
Query 700 g-tgaagaGCAACT--CAGA------TGC---TGCA--AG-TGA-G-TCC-G---CTGAG 738
| ||||||||| || | ||| ||| || ||| | | | | ||||
Sbjct 1038 TCTCAAGAGCAACAAGCAAACAACAATGCCGATGCTGTAGATGAAGCTGCTGGGTCTGAA 1097
Query 739 C-AG--GAGGA-GTCTTCTTCTTCCATTGATGTCAAAGAACGTCTAAAGAAGATTGCATC 794
| | ||||| | | || | | ||||| ||||| ||| | |||||||| |||||||
Sbjct 1098 CCAACTGAGGAAGAAT-CT-C--CAATTGACGTCAAGGAAAGGATAAAGAAGCTTGCATC 1153
Query 795 AATGAAGAAGAAGAAATCAAGCAAAGAGGTGGATGGTGC--CTCAACAGCCGCCGCAAAG 852
|||||||||||||| ||| ||||||||||||||| ||| || || ||| || || ||
Sbjct 1154 CATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCT-AA-AGCTGCTGCGGAG 1211
Query 853 GAAGCAGCTGCGAGGAAGGCA-AAGTTGGCCGCGGCgaagaaaaaagaaaagaaaaaCTA 911
|| |||||||| || | | | ||| |||||||||| ||||| || || ||||| ||||
Sbjct 1212 GAGGCAGCTGCAAG-ACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCACTA 1270
Query 912 CAATCAGCAACCT 924
|| || || |||
Sbjct 1271 TAACCAACAGCCT 1283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81525685080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5