BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328475
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32570.1 | Symbols: TIFY8 | TIFY domain protein 8 | chr4:157... 1537 0.0
> AT4G32570.1 | Symbols: TIFY8 | TIFY domain protein 8 | chr4:15716232-15718858
REVERSE LENGTH=1443
Length=1443
Score = 1537 bits (832), Expect = 0.0
Identities = 1005/1084 (93%), Gaps = 29/1084 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAACCACAACATTGGCCAGCGACCCACTGATATTGATTCTCGTCTCCGACAGACA 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 ATGGTGAACCACAACAATGGCCAGCGACCCACTGATATTGATTCTCGTCTCCGACAGACA 219
Query 61 GAACAAGATAAGCTCTTGTTCCATGACTTTCTAGGCTCCAAGACTCCAACTTTAGCCTCC 120
|||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||
Sbjct 220 GAACAAGATAAGCTCTTGTTCCATGACTTTTTAGGCTCCAAGAATCCTACTTTAGCATCC 279
Query 121 ACTCCCATGGCTGACCATAGGATACCACCGG------A------TAAAGCGGCGATGACT 168
||| ||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 280 ACTTCCATGGCTGACCATAGGCTACCACCGGATAATAAGGCGGCTAAAGCGGCGATGACT 339
Query 169 CCCTCTACGGCTTCTGCTTCCACCGCCGGTGGACGCGGCGGTCTCTCCTCAACCTCCGAT 228
|| || ||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 340 CCTTCCACGGCTTCTGCTTCCTCCGCCGGTGGACTCGGCGGTCTCTCCTCAACCTCCGAT 399
Query 229 CTCGTCGAAAGACACAGCGGTGGAGGGAATCATCTTGATGGGATGCAAGTGTTTGGACCA 288
|||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||
Sbjct 400 CTCGTCGAAAGACACAGCGGCGGTGGGAATCATCTTGATGGGATACAATTGTTTGGACCA 459
Query 289 AGAAGTGATGCTTCTGGCTCAATCATGAGCAATCGATTTTCAGGAAACAAGAGAAGTAAC 348
|||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 460 AGAAGTGATGTTTCTGGCTCAATCATGAGCAATCGGTTTTCAGGAAATAAGAGAAGTAAC 519
Query 349 TCGGATTCACACTTCACGACTCAAGAGCACCCAGAGACTCTGCATTGGTCCAAGTTGCTT 408
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 520 TCTGATTCTCACTTCACGACTCAGGAGCACCCAGAGACTCTGCATTGGTCCAAGTTGCTT 579
Query 409 AGAAACGGGCCTGGAAGCTTCTCCATGAATGTGAATCCTTTGGCAAACCAGCCTCCACGC 468
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGAAACGGACCTGGAAGCTTCTCCATGAATGTGAATCCTTTGGCAAACCAGCCTCCACGC 639
Query 469 GGAGGGGGGCAGACCAGTCATTTGCTTCATCAGCTGTCTACAAGCAGATTTAAAGATGAA 528
||||| || |||| ||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 640 GGAGGAGGACAGATCAGTCATTTGCTTCATCAGCTGTCTACTAGCAGGTTCAAAGATGAG 699
Query 529 AACGTAGGCCTATCAGTTATTGCTCAGACAGCTGCTGATGAAGGTTCACGAACAGGGATG 588
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 AACGTAGGCCCATCAGTTATTGCTCAGACAGCTGCTGATGAAGGTTCACGAACAGGGATG 759
Query 589 AAAGGTCCCGGTATCTTGAGTTCTTTTACAATGCCAAGCTCGAGCAAGCTAGAAAGTTTT 648
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 760 AAAGGTCCCGGTATCTTGAGTTCTTTTACAATGCCAAACTCAAGCAAGCTCGAAAGTTTT 819
Query 649 GCCCATTCAAGTACCAGAAATCAGAAAGACTTGGCGTCGAGTACAAAGCAAATGACCATC 708
|||| ||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 820 GCCCCTTCAAATACCGGAAATCGGAAAGACTTGGCGTCGAGTACTAAGCAAATGACCATC 879
Query 709 TTCTATGGCGGTCAAGCTCATGTCTTTGATGATGTTCACCCAAACAAGGCGGATGTGATA 768
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 880 TTCTATGGCGGTCAAGCTCATGTCTTTGATGACGTTCACCCAAACAAGGCGGATGTGATA 939
Query 769 ATGGCCTTGGCAGGATCAAGCGGGGGCTCATGGTCTACGGGTTTGTCTCATAAACCGAAG 828
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 940 ATGGCCTTGGCAGGATCAAGCGGAGGCTCATGGTCTACGGGTTTGTCTCATAAACCGAAG 999
Query 829 TCGAAGAACAACACAAGTGACGGTCCATACAAACTAGGCCAAATGTATGAAGGAGGCAGC 888
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1000 TCGAAGAACAACACAAGTGACGGTCCATACAAGCTAGGCCAAATGTATGAAGGAGGCAGC 1059
Query 889 TCTAGAG-AAACACCCCTTTTGGCCCCGGAGTTTCGTGCAAGGCCGAGCCATCAACCTAC 947
|||| || ||||||| | || ||||||| ||||||||||||||||| |||||||||||
Sbjct 1060 TCTA-AGGAAACACCACAAATGCCCCCGGAATTTCGTGCAAGGCCGAGTCATCAACCTAC 1118
Query 948 CTCCAGTGCCTGTCACCGGATCTTTACACAACCAGG-A-AG--CATCA--------TC-T 994
|||||||||||||||||||||||||||||||||||| | || ||||| || |
Sbjct 1119 CTCCAGTGCCTGTCACCGGATCTTTACACAACCAGGTAGAGAGCATCAAGGAAGCATCAT 1178
Query 995 C--AAGGGGACGAGATATCAGAGATCCGGTTCACATATCAGATCCTGAAAAAGAAGCCTC 1052
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1179 CTCAAGGGGACGAGATATCAGAGATCCGGTTCACAGATCAGATCCTGAAAAAGAAGCCAC 1238
Query 1053 ATGA 1056
||||
Sbjct 1239 ATGA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5