BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328525
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G32040.1 | Symbols: KNAT5 | KNOTTED1-like homeobox gene 5 | ... 1912 0.0
AT1G62990.1 | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of ... 167 2e-40
> AT4G32040.1 | Symbols: KNAT5 | KNOTTED1-like homeobox gene 5
| chr4:15494065-15496356 FORWARD LENGTH=1561
Length=1561
Score = 1912 bits (1035), Expect = 0.0
Identities = 1103/1137 (97%), Gaps = 0/1137 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ATGTCGTTTAACAGCTCCCACCTCCTTCCTCCACAAGAAGACCTTCCTCTCCGACACTTC 122
Query 61 GCCGATCAATCACAGCAACCGACGTCGCAGCGTCACTTCTCTGAAACACCTTCGCTTGTC 120
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 123 ACCGATCAATCACAGCAACCTCCGCCGCAGCGTCACTTCTCTGAAACACCTTCGCTTGTC 182
Query 121 ACCGCCAGCTTCCTCAACCTCCCTACCACAATAACCACTGCGGATTCCGATCTCGCTCCT 180
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 183 ACCGCCAGTTTCCTCAACCTCCCTACCACCCTTACCACTGCGGATTCCGATCTCGCTCCT 242
Query 181 CCGCACCGCAACGGAGACAATTCCGTTGCTGATACAAACCCACGGTGGCTCTCCTTTCAT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 243 CCGCACCGCAACGGAGACAATTCCGTTGCTGATACAAACCCACGCTGGCTCTCCTTTCAT 302
Query 241 ACGGAGATGCAAAATACTGGAGAAGTTCGTTCTGAAGTTATCGACGGAGTCAACGCCGAT 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 303 TCGGAGATGCAAAATACTGGAGAAGTACGTTCTGAAGTTATCGACGGAGTCAACGCCGAT 362
Query 301 GGTGAAACGATACTTGGTGTTGTTGGAGGTGAAGATTGGCGGAGCGCTAGCTATAAGGCG 360
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 363 GGTGAAACGATACTCGGCGTTGTAGGAGGTGAAGATTGGCGGAGTGCTAGCTATAAGGCG 422
Query 361 GCGATTTTGAGACATCCGATGTATGAGCAGCTTCTTGCGGCTCACGTGGCTTGCCTTCGG 420
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 423 GCGATTTTAAGACATCCGATGTACGAGCAGCTTCTTGCGGCTCACGTGGCTTGCCTTAGG 482
Query 421 GTTGCGACTCCTGTTGACCAGATTCCGAGGATCGATGCTCAGCTTAGCCAGTTGCATACC 480
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 483 GTTGCGACTCCCGTTGACCAGATTCCGAGGATCGATGCTCAGCTCAGTCAGTTGCATACC 542
Query 481 GTCGCCGCGAAATACTCCACTCTTGGTGTGGTTGTGGACAACAAGGAACTTGATCATTTC 540
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 543 GTCGCCGCGAAATACTCCACTCTTGGTGTGGTTGTTGACAACAAGGAACTTGATCATTTC 602
Query 541 ATGTCACATTATGTTGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ATGTCACATTATGTTGTCTTGTTATGTTCATTTAAAGAACAACTCCAACACCACGTTTGT 662
Query 601 GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATCGAGCAATCACTGCAATCCTTG 660
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 663 GTCCATGCAATGGAAGCCATTACGGCTTGTTGGGAGATTGAACAATCACTGCAATCCCTA 722
Query 661 ACGGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGTCGGAAGATGAAGATGATAAT 720
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 723 ACTGGAGTTTCTCCAAGTGAAAGTAATGGTAAGACAATGTCGGATGATGAAGATGATAAT 782
Query 721 CAAGTAGAGAGCGAGGTTAACATGTATGATGGAAGTTTGGACGGTTCAGATTGCTTGATG 780
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 783 CAAGTAGAGAGCGAGGTGAACATGTTTGATGGAAGTTTGGACGGTTCAGATTGCTTGATG 842
Query 781 GGGTTTGGTCCTCTTGTTCCAACCgagagagagagaTCTTTGATGGAACGTGTGAAGAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGGTTTGGTCCTCTTGTTCCAACCGAGAGAGAGAGATCTTTGATGGAACGTGTGAAGAAA 902
Query 841 GAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GAACTGAAGCATGAGCTTAAACAGGGTTTCAAAGAGAAGATTGTGGACATAAGAGAAGAG 962
Query 901 ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCGGGAGATACGACTTCTGTACTCAAAGAG 960
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 963 ATAATGAGGAAGAGAAGGGCGGGAAAGTTGCCAGGAGATACGACTTCTGTACTCAAAGAA 1022
Query 961 TGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGGAAGATAAGGCAAAACTGGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGGTGGCGAACTCACTCGAAATGGCCATACCCAACTGAGGAAGATAAGGCAAAACTGGTT 1082
Query 1021 CAAGAAACCGGTTTGCAGTTGAAACAGATCAACAATTGGTTCATCAACCAGAGGAAAAGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 CAAGAAACCGGTTTGCAGTTGAAACAGATCAACAATTGGTTCATCAACCAGAGGAAAAGA 1142
Query 1081 AACTGGAACAGCAACTCTTCCACGTCATCTACTCTCAGCAAGAACAAACGTAAACGG 1137
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1143 AACTGGAACAGCAACTCTTCCACGTCATCTACTCTCACCAAGAACAAACGTAAACGG 1199
> AT1G62990.1 | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of
Arabidopsis thaliana 7 | chr1:23337365-23340688 FORWARD LENGTH=1319
Length=1319
Score = 167 bits (90), Expect = 2e-40
Identities = 223/285 (78%), Gaps = 18/285 (6%)
Strand=Plus/Plus
Query 823 ATGGAACGTGTGAAGA-AAGAACTGAAGCAT-GAGCTTAAACAGGGTTTCAAA--GAGAA 878
|||||| | || ||| ||||||| || | | || || ||||||||||| ||| ||| |
Sbjct 665 ATGGAAAGAGT-CAGACAAGAACTCAAAC-TAGAACTCAAACAGGGTTTTAAATCGAG-A 721
Query 879 GATTGTGGACATAAGAGAAGAGATAATGAGGAAGAGAAGGGC-GGGAAAGTTGCCGGGAG 937
|| | || ||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct 722 -ATCGAAGATGTAAGAGAAGAGATAATGAGGAAGAGAAGGGCTGGGAAA-TTGCCAGGAG 779
Query 938 ATACGACTTCTGTACTC-AAAGAGTGGTGGCGAACT-CACT-CGAAATGGCCATACCCAA 994
| || ||| |||| || ||| | ||||||| ||| || | | |||||||| ||||| |
Sbjct 780 ACACAACTACTGT-CTTGAAAAATTGGTGGC-AACAACATTGC-AAATGGCCTTACCCTA 836
Query 995 CTGAGGAAGATAAGGCAAAACTGGTTCAAGAAACCGGTTTGCAGTTGAAACAGATCAACA 1054
| || || || ||||||||| |||| | || || || ||||||||||| || |||||||
Sbjct 837 CGGAAGATGACAAGGCAAAATTGGTGGAGGAGACAGGATTGCAGTTGAAGCAAATCAACA 896
Query 1055 ATTGGTTCATCAACCAGAGGAAA-AGAAACTGGAACAGCAACTCT 1098
|||||||||| ||||| | | || || || ||| ||| |||||||
Sbjct 897 ATTGGTTCATTAACCA-ACGCAAGAGGAATTGGCACAACAACTCT 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5