BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328542
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31870.1 | Symbols: ATGPX7, GPX7 | glutathione peroxidase 7 ... 902 0.0
AT2G25080.1 | Symbols: ATGPX1, GPX1 | glutathione peroxidase 1 ... 451 4e-126
> AT4G31870.1 | Symbols: ATGPX7, GPX7 | glutathione peroxidase
7 | chr4:15410205-15411617 FORWARD LENGTH=702
Length=702
Score = 902 bits (488), Expect = 0.0
Identities = 626/690 (91%), Gaps = 20/690 (3%)
Strand=Plus/Plus
Query 1 ATGGCCTCCTTTTACGCATCATTCGCTACTGTCTTCAATGGTTTCGCTGCAAA-CCCTCC 59
||||| | || ||||||||||||| |||| ||||||||||||||||||||| || | |
Sbjct 1 ATGGCTTTCTCTTACGCATCATTCTCTACACCCTTCAATGGTTTCGCTGCAAATCCGT-C 59
Query 60 TCCGAATT-CTTCGGCTATTCTCGTCCCTTAATTGAGATTCTCCACCGGAACATCAAAAA 118
|||| ||| |||| ||| |||||| ||| | |||||||||||||||| ||||||||||||
Sbjct 60 TCCG-ATTACTTCCGCTTTTCTCGGCCCATCATTGAGATTCTCCACCAGAACATCAAAAA 118
Query 119 CTCGGAATATATCTGGGTTAGGTAATGGGGTTTCCCTGAAATCGTCGAATAATCATAGGT 178
||||| | ||| | | ||||||||||||| |||||||||| |||| ||||||||
Sbjct 119 CTCGG---A-ATC--CG--A-GTAATGGGGTTTCAGTGAAATCGTCAAATAGTCATAGGT 169
Query 179 TTCTAGTCAAATCCAGAAATTTTGGTGTTTATGCAAGAGCTGCTGCAGAGAAGACTGTTC 238
||||||||||||| | |||||| |||| |||||||| ||||| ||||||||| ||||||
Sbjct 170 TTCTAGTCAAATCTAAAAATTTCAGTGTCTATGCAAGGGCTGCAGCAGAGAAGTCTGTTC 229
Query 239 ACGATTTCACTGTAAAGGACATAGATGGGAATGATGTTTCTCTGGACAAATTCAAAGGAA 298
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 230 ACGATTTCACTGTAAAGGACATCGATGGTAATGATGTTTCTCTGGACAAATTCAAAGGAA 289
Query 299 AACCTCTGTTGATCTTTAACGTCGCTTCAAGATGTGGTTTGACATCATCAAATTACTCGG 358
||||| |||||||| ||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 290 AACCTTTGTTGATCGTTAACGTTGCGTCAAGATGTGGTTTGACATCATCAAATTACTCAG 349
Query 359 AGCTTTCTCATCTGTACGAAAAATACAAGAACCAAGGTGATTTGAGATTCTTGCTTTCCC 418
|||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 350 AGCTTTCTCAACTGTACGAAAAATACAAGAACCAA-G-GATTTGAGATTCTTGCTTTCCC 407
Query 419 TTGCAATCAATTTGGAGGTCAAGAACCCGGTTCAAACCCTGAGATCAAGCAATTTGCTTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TTGCAATCAATTTGGAGGTCAAGAACCCGGTTCAAACCCTGAGATCAAGCAATTTGCTTG 467
Query 479 CACCCGATTCAAAGTGGAGTTCCCTATATTCGACAAGGTATGTTGATGTCAATGGACCAA 538
|||||| ||||||| ||||||||||||||||||||||| || || || ||||||||||
Sbjct 468 CACCCGGTTCAAAGCAGAGTTCCCTATATTCGACAAGGT-TGATG-TG--AATGGACCAA 523
Query 539 GCACAGCTCCAATCTACAAGTTCTTGAAATCTAATGCTGGTGGTTTTCTTGGTGATATCA 598
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 524 GCACAGCTCCAATCTACAAGTTCTTGAAATCCAATGCTGGTGGTTTCCTTGGTGATATCA 583
Query 599 TCAAATGGAACTTTGAGAAATTCTTGGTTGATAAGAAGTGCAAAGTTGTCGAGAGATACC 658
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 584 TCAAATGGAACTTTGAGAAATTCTTGGTTGATAAAAAGGGCAAAGTTGTCGAGAGATACC 643
Query 659 CTCCCACGACTTCTCCTTTCCAAAATCGAG 688
||||||| |||||||||||||||| |||||
Sbjct 644 CTCCCACAACTTCTCCTTTCCAAA-TCGAG 672
> AT2G25080.1 | Symbols: ATGPX1, GPX1 | glutathione peroxidase
1 | chr2:10668049-10670019 FORWARD LENGTH=987
Length=987
Score = 451 bits (244), Expect = 4e-126
Identities = 501/621 (81%), Gaps = 34/621 (5%)
Strand=Plus/Plus
Query 77 TTCTCGTCCCTTAATTGAGATTCTCCACCGGAACATCAAAAACTCGGAATATATCTGGGT 136
|||||||||||| |||| |||||||||||||| ||| || || | | |||| |
Sbjct 171 TTCTCGTCCCTTCCTTGAAATTCTCCACCGGAATATC-GAATTTC-G-CGA-ATCT--G- 223
Query 137 TAGGTAATGGGGTTTCCCTGAAATCGTCGAA-TAATCATAGGTTTCTAGTCAAATC-CAG 194
| |||||||| |||| || ||||| || || ||||| | ||||||| |||| || | |
Sbjct 224 -A-GTAATGGGTTTTCTCTAAAATC-TCCAATTAATCCTGGGTTTCTCTTCAAGTCTC-G 279
Query 195 AAATTTTGGTGTTTATGCAAGAGCTGCTGCAGAGAAGACTGTTCACGATTTCACTGTAAA 254
||| ||| | || |||||||||||||| || || |||||||||||||| || ||
Sbjct 280 TCCTTTCACTGTCCAAGCTAGAGCTGCTGCAGAAAAAACCGTTCACGATTTCACCGTTAA 339
Query 255 GGACATAGATGGGAATGATGTTTCTCTGGACAAATTCAAAGGAAAACCTCTGTTGATCT- 313
|||||| |||||||| |||||| || || |||||||||| || ||| | ||||||| |
Sbjct 340 GGACATTGATGGGAAGGATGTTGCTTTGAACAAATTCAAGGGGAAAGTTATGTTGAT-TG 398
Query 314 TTAACGTCGCTTCAAGATGTGGTTTGACATCATCAAATTACTCGGAGCTTTCTCATCTGT 373
| || || ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 399 TCAATGTTGCTTCAAGATGTGGTTTGACATCATCAAATTACTCAGAGCTTTCACATCTGT 458
Query 374 ACGAAAAATACAAGAAC-CAAGGTGATTTGAGATTCTTGCTTT-CCCTTGCAATCAATTT 431
|||| |||||||| ||| ||||| |||||||||||| ||||| |||| ||||||| |||
Sbjct 459 ACGAGAAATACAA-AACTCAAGG--ATTTGAGATTCTAGCTTTTCCCT-GCAATCAGTTT 514
Query 432 GGAGGTC-AAGAACCCGGTTCAAAC-CCTGAGATCAAGCAATTTGCTTGCACCCGATTCA 489
|| || |||| ||||| |||||| || |||||||| ||||| ||||||||||| || |
Sbjct 515 GGTT-TCCAAGAGCCCGGGTCAAACTCC-GAGATCAAACAATTCGCTTGCACCCGGTTTA 572
Query 490 AAGTGGAGTTCCCTATATTCGACAAGGTATGTTGATGTCAATGGACCAAGCACAGCTCCA 549
||| |||||||||||||| || ||||| || | || ||||||||||||||||| ||
Sbjct 573 AAGCAGAGTTCCCTATATTTGATAAGGT-TGACG-TG--AATGGACCAAGCACAGCGCCG 628
Query 550 ATCTACAAGTTCTTGAAATCTAATGCTGGTGGTTTTCTTGG-TGATATCATCAAATGGAA 608
|||||| ||||||||||||| || || || || || ||||| || | |||| ||||||||
Sbjct 629 ATCTACGAGTTCTTGAAATCAAACGCAGGAGGATT-CTTGGGTGGTCTCATTAAATGGAA 687
Query 609 CTTTGAGAAATTCTTGGTTGATAAGAAGTGCAAAGTT-GTCGAGAGATACCCTCCCACGA 667
||||||||| |||||| ||||||| ||| | |||| | || ||||| ||||||||||| |
Sbjct 688 CTTTGAGAAGTTCTTGATTGATAAAAAGGG-AAAGGTCGTTGAGAGGTACCCTCCCACCA 746
Query 668 CTTCTCCTTTCCAAAATCGAG 688
| || |||||||||| |||||
Sbjct 747 CATCCCCTTTCCAAA-TCGAG 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5