BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328749
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT4G29658.1 | Symbols: PRA1.C | prenylated RAB acceptor 1.C | c... 582 1e-165
AT4G29660.1 | Symbols: EMB2752 | embryo defective 2752 | chr4:1... 481 5e-135
> AT4G29658.1 | Symbols: PRA1.C | prenylated RAB acceptor 1.C |
chr4:14533447-14533830 REVERSE LENGTH=384
Length=384
Score = 582 bits (315), Expect = 1e-165
Identities = 365/388 (94%), Gaps = 8/388 (2%)
Strand=Plus/Plus
Query 436 ATGATCTTCCGAACCAACTACATTGTCATCTTCATTGTTACTATCTTCATCAGCATGCTC 495
|||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1 ATGATCTTTCGAACCAACTACATTGTTATCTTCATTGTTAGTATCTTCATCAGCATGCTT 60
Query 496 TGGCAACCCGTCCACCTTTCTGTCTTTTTTATCTTGATAGTAGCATGGCTATATGTCTAC 555
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TGGCAACCCGTCCACCTTTCCGTCTTTGTTATCTTGATAGTAGCATGGCTATATGTCTAC 120
Query 556 TCCCGTGATAATGAACCATGGGTGATATTTGGCAATGTGATCGATGATTCTACTTTGGTG 615
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCCCGTGATAATGAACCATGGGTGATATTTGGCAGTGTGATCGATGATTCTACTTTGGTG 180
Query 616 CTGGTTTTGTTGGTCCTCACGATCGGTATATTTCTATTAACAGATGTATCCCGCGGTATT 675
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTGGTTTTGTTGGTCCTCACGATCGGTATATTTCTACTAACAGATGTATCCCGCGGTATT 240
Query 676 ATGATCGGGGTTTTGGCTGGTTTGCCCATTGTTCTGGTTCATGGCATGTGTAGGA--A-T 732
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 241 GTGATCGGGGTTTTGGCTGGTTTGCCCGTTGTTCTGGTTCATGGCATGTGTAGGAGGAAT 300
Query 733 ACAGAGATGTTGTTCGTCTTGGAAGATGATGAAGAGAA-GCTGACAATTAACACAGCAAA 791
|||||||||||||||||||||||||||||||||||||| | || |||| |||||| ||
Sbjct 301 ACAGAGATGTTGTTCGTCTTGGAAGATGATGAAGAGAAAG-TGGCAATGAACACATCA-- 357
Query 792 ATCTTCGTCGCTTTCTTCTTCCTCGTAA 819
|||||||| |||||||||||||| |||
Sbjct 358 -TCTTCGTCACTTTCTTCTTCCTCTTAA 384
> AT4G29660.1 | Symbols: EMB2752 | embryo defective 2752 | chr4:14534263-14535292
REVERSE LENGTH=665
Length=665
Score = 481 bits (260), Expect = 5e-135
Identities = 270/275 (98%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 1 ATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATACGCTGATTATAAGTACAACAAGTTC 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 122 ATGCAAGGAGTGTGGAGCCAACTATGGAGGAAATATGCTGATTATAAGTACAATAAGTTC 181
Query 61 GAGAGATTTGCTGTCTGGGAAATGATCGAACCTTACCGTCGACCAAAAACCTTCACAACT 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GAGAGATTTGCTGTTTGGGAAATGATCGAACCTTACCGTCGACCAAAAACCTTCACAACT 241
Query 121 TTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCATTGGAGCTGCAGTTACAGAG 180
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 242 TTGATTACTATCTATGTCGCCGCCTTTTACACCGGCGTCATCGGCGCTGCAGTTACAGAG 301
Query 181 CAGCTCTACAAGGAGAAGTTTTGGGAAGAGCACCCAGGGAAAACAGTGCCTCTGATGAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CAGCTCTACAAGGAGAAGTTTTGGGAAGAGCACCCAGGGAAAACAGTGCCTCTGATGAAG 361
Query 241 CCAGTATTCTATCGAGGACCATGGAGAGTTTATCG 275
|||||||||||||||||||||||||||||||||||
Sbjct 362 CCAGTATTCTATCGAGGACCATGGAGAGTTTATCG 396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5