BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg328890
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT4G28030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1310 0.0
> AT4G28030.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr4:13937676-13939144 REVERSE LENGTH=910
Length=910
Score = 1310 bits (709), Expect = 0.0
Identities = 790/829 (95%), Gaps = 5/829 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTTTCTCTGTTCGTCTCTTCCAAGTTCATCCTCTATCGCCATTTTCAGCGAGTCA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||
Sbjct 14 ATGGCGTTTCTCTGTTCGTCTCTCCCAAGTTCATCCTCTATCGCCATTTTCGGCGACCCA 73
Query 61 AACACAGATGGATCATCACGCTCG-ACTCTTTCGATTCCTTCCTTGAGGTTCCGGTTCCG 119
|||||||||||||||||||||||| | ||||||||||||||| |||| ||| ||||||||
Sbjct 74 AACACAGATGGATCATCACGCTCGTA-TCTTTCGATTCCTTCATTGAAGTTACGGTTCCG 132
Query 120 TCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGATAAGTCGACGTTCGTCAT 179
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 133 TCCCGTCGCTGCTTCCTCACACATTTGTGCTCCAGCGATCGACAAGTCGACTTTCGTCAT 192
Query 180 ATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATCCGAATCGGTGTCAGAAGATGAGCTTTGGGCTGCAGCTTGTCTCCGCGTACGAACCTT 252
Query 240 CAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CAACGAACTCAATCCTTCTGCTTACAATATCCAAGATCATAGAAGATACTTGGCAGAGCG 312
Query 300 TGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TGAATTCGAGGCGCTTAAGGAGAGAACTTCAGGGAAGAGGGAAGGGTTTACGCGGGTCGC 372
Query 360 CTGCATAAACGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTGTGAGGATTTATGCTC 419
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 373 TTGCATAAATGCTACCCTTCCATTGTCGCAATTATCAAGCTCTTTTGAGGATTTATGCTC 432
Query 420 TTCATGCAAGTTTTCTGATGGCATAGAAGACAGAGTTGTGGTGGGGAGCCTCGATCTTAA 479
| |||| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 433 TGCATGTAAGTTCTCTGATGGCATAGAAGACAGAGTTGTGGTGGGAAGCCTTGATCTTAA 492
Query 480 CCAATGTCGGTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGA 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 CCAATGTCGTTGGCTTCCTGATGAAATTGCTGGAACAAAACCAGAGGGGATTGGTGTGGA 552
Query 540 TTTCGCAAGGGCATACTTAAGCAACGTTTGTGTTGCTAAAGAGCTGCATCGTAATGGAGT 599
||| || || |||||||| |||||||| |||||||| |||||||||||||||||||||||
Sbjct 553 TTTTGCTAGAGCATACTTGAGCAACGTCTGTGTTGCAAAAGAGCTGCATCGTAATGGAGT 612
Query 600 TGGTTACAAACTCATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATAT 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TGGTTACAAACTTATTGACAAGTCTAAGAGAGTTGCTGGAGAATGGGGCATAACGGATAT 672
Query 660 GTACGTGCATGTGACGGTAGACAATGAAGCTGCGAAGAGGCTATACATGAAAAGTGGGTT 719
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 673 GTACGTGCATGTGACGGTAGACAATGAAGCAGCGAAGAGTCTATACATGAAAAGTGGGTT 732
Query 720 CGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAACAGGCCACAACGGCT 779
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 733 TGAGCAAGAGACCGCTGAGCCAGCGTGGCAAGCTCGATACCTCAATAGGCCACAACGGCT 792
Query 780 CCTCCTCTGGCTATCCCTCCCTACTACCTCCTCAATTATGTCCATGTAA 828
|||||||||||| |||| ||||| | ||| |||| ||||||||||||
Sbjct 793 CCTCCTCTGGCTCGCCCTTCCTAC--C-TCCCCAATCATGTCCATGTAA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5