BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg329112
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25570.1 | Symbols: ACYB-2 | Cytochrome b561/ferric reductas... 739 0.0
> AT4G25570.1 | Symbols: ACYB-2 | Cytochrome b561/ferric reductase
transmembrane protein family | chr4:13053686-13055623 REVERSE
LENGTH=1026
Length=1026
Score = 739 bits (400), Expect = 0.0
Identities = 450/474 (95%), Gaps = 4/474 (1%)
Strand=Plus/Plus
Query 225 CCATTATAAGTTACAAATCGCTTCCGTTGGAGAAACCAGTGAAGAAGTTGATCCACCTTA 284
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 CCATCATAAGTTACAAATCGCTTCCGCTGGAGAAACCAGTGAAGAAGTTGATCCACCTTA 358
Query 285 TACTCCA-GCCATTGCTCTGGCTCTTGGGATCTTCGGCATCTGTGCAGCCTTCAAGAACC 343
||||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 359 TACTCCATGCCATTGCTCTGGCTCTTGGGATATTTGGCATCTGTGCAGCCTTTAAGAACC 418
Query 344 ACAATGAAAGCGGA-ATCCCTAATCTCTACAGTCTCCATTCTTGGATTGGTATTGGAGTC 402
||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 419 ACAATGAAAGC-CATATCCCTAATCTCTACAGTCTCCATTCCTGGATTGGTATTGGAGTC 477
Query 403 ATTTCCCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGA 462
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATTTCTCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGA 537
Query 463 TCAACAAATCTGAGAAGCGGATTGCTTCCGTGGCATGCAATGCTCGGCCTATTTGTTTAC 522
||||||||| ||| ||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 538 TCAACAAATTTGAAAAGCGGATTGCTTCCGTGGCACGCAATGCTTGGCCTGTTTGTTTAC 597
Query 523 ATACTTGCTGTTGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAAAAT 582
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 ATACTTGCTGTCGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAGAAT 657
Query 583 GGAGGGCTTGACAAGTATGGATCCGAGGCATTTCTTATCAACTTCACGGCCATTATCACT 642
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 658 GGAGGGCTTGACAAGTATGGATCCGAAGCATTTCTTATCAACTTCACGGCCATTATCACT 717
Query 643 ATTCTCTTTGCTACCTTTGTGGTACTCACTGCTTCTGCTAAGTCTCCCTCCTCC 696
|||||||||| | |||||||||||||||||||||||||| ||||||| || |||
Sbjct 718 ATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTGCTGAGTCTCCTTC-TCC 770
Score = 318 bits (172), Expect = 4e-86
Identities = 186/193 (96%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGTCGGGATAAACGCGCTGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATC 60
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 106 ATGGCTGTCCGGATAAACGCGATGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATA 165
Query 61 GCAGCGATTATGGTGCTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCTTGGGAAGCT 120
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 166 GCGGCGATTATGGTACTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCCTGGGAAGCT 225
Query 121 ACTAACAAAAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 ACTAACAAGAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATC 285
Query 181 TTGGGAGGAGAAG 193
|||||||||||||
Sbjct 286 TTGGGAGGAGAAG 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5