BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg329483 Length=954 Score E Sequences producing significant alignments: (Bits) Value AT4G21190.1 | Symbols: emb1417 | Pentatricopeptide repeat (PPR)... 1391 0.0 > AT4G21190.1 | Symbols: emb1417 | Pentatricopeptide repeat (PPR) superfamily protein | chr4:11292192-11294009 REVERSE LENGTH=1308 Length=1308 Score = 1391 bits (753), Expect = 0.0 Identities = 893/955 (94%), Gaps = 32/955 (3%) Strand=Plus/Plus Query 1 ATGCTTAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 ATGCTAAGCTTGAGATATTCATTACCTTATCTTCTTCTTCAAACAAGGGAATCATCAACT 143 Query 61 AAGCTCTTCTCCAAAAGGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 120 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 AAGCTCTTCACCAAAAAGCCTAACAATGTTGTGGTTTGTGCGGCGAGAGGTCCAAGACCT 203 Query 121 CGGTCTCCTCGAGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCCAAGGCTGCCAAA 180 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 204 CGGTCTCCTCGTGTATGGAAAACAAGGAAGAGGATTGGAACTATCTCTAAAGCTGCCAAA 263 Query 181 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTACGGAGCGCTTGAT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 264 ATGATTGCTTGTATAAAAGGATTGTCGAATGTTAAAGAAGAAGTTTATGGAGCGCTTGAT 323 Query 241 TCCTTCATTGCTTGGGAGTTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 324 TCCTTCATTGCTTGGGAATTAGAGTTCCCTCTTGTTATAGTTAAGAAGGCATTAGTTATA 383 Query 301 CTTGAAGATGAAAAAGAGTGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 360 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 384 CTTGAAGATGAAAAAGAATGGAAGAAGATTATTCAGGTGACAAAATGGATGCTGAGTAAA 443 Query 361 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 444 GGCCAAGGAAGAACAATGGGAACTTACTTCTCATTACTAAATGCTTTAGCAGAAGATAAT 503 Query 421 CGGCTTGACGAAGCTGAGGAATTGTGGAACAAGTTGTTCATGGAACATTTAGAAGGAACT 480 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 504 CGCCTTGACGAAGCTGAGGAATTGTGGAACAAATTGTTCATGGAACATTTAGAAGGAACT 563 Query 481 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 564 CCTAGAAAGTTCTTCAACAAAATGATCTCTATATATTACAAGAGAGATATGCACCAAAAG 623 Query 541 CTCTTTGAGGTATTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAACGTTGCGATTGTG 600 ||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 624 CTCTTCGAGGTCTTTGCTGACATGGAGGAGCTTGGAGTGAAACCGAATGTTGCGATTGTG 683 Query 601 TCTATGGTTGGAAAAGTGTTTGTGAAATTAGAGATGAAGGATAAGTACGAGAAACTGATG 660 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 684 TCTATGGTTGGAAAAGTGTTTGTGAAACTAGAGATGAAGGATAAGTACGAGAAACTGATG 743 Query 661 AAGAAATATCCTCCACCTCAGTGGGAGTTCAGATACATCAAAGGAAGACGCGTTAAGGTC 720 ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| Sbjct 744 AAGAAATATCCTCCACCACAGTGGGAGTTTAGATACATCAAAGGAAGACGTGTTAAGGTC 803 Query 721 AAGGCAAAGCAGCTAAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGATGAAGAT 780 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 804 AAGGCAAAGCAGCTGAATGAGCTAAGCGAAGGTGAAGGTGGTTTAAGCAGCGACGAAGAT 863 Query 781 AAGATTGATACTGAGATTGAGAGTAAATCTAA-AATGTTGTCAGATAAGGAACCAGAGCA 839 |||||||| | ||||||||||||| || || || | || | | |||| | || Sbjct 864 AAGATTGACAATGAGATTGAGAGTGAAG--AAGAA-GATG---G-TGAGGATCT----CA 912 Query 840 AGATGGTGAGGATCTCAGTGAAGAGGAAGAAGATGAAAAAGAACTTTTGGGTGGAAATCA 899 | || || | | ||||| | || ||||||||||||||||||||||| ||| Sbjct 913 -G-TGA--AG-A-----G-GAAGA--A-GA---TGAAAAAGAACTTTTGGGTGGAAGTCA 955 Query 900 AGGACAGATTGGAACTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 954 |||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 956 AGGACAGATT--A-CTTCTAGAGAACCCAGTCTTGATCATTTGGACTCTTCATGA 1007 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46667522563 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5