BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg330043
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14690.1 | Symbols: ELIP2 | Chlorophyll A-B binding family p... 915 0.0
AT4G14695.1 | Symbols: | Uncharacterised protein family (UPF00... 617 5e-176
> AT4G14690.1 | Symbols: ELIP2 | Chlorophyll A-B binding family
protein | chr4:8418283-8419263 FORWARD LENGTH=806
Length=806
Score = 915 bits (495), Expect = 0.0
Identities = 551/578 (95%), Gaps = 3/578 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACGGCGTCGTTTAACATGCAGTCAGTGTTCGCTGCTCCTTCCGGTGTATTGAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 91 ATGGCAACGGCGTCGTTTAACATGCAGTCAGTGTTCGCTGCTCCTTCCGGTGTATTG-AC 149
Query 61 TCATCACGTAACATCAGAAACACAAACCAACTCTTCTTCAAGAGGAATGCTCCGGTGGGA 120
| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 150 T-A-CACGCAACATCAGAAACACAAACCAACTCTTCTTCAAGAGGATTGCTCCGGTAGGA 207
Query 121 GTCAGATGCATGGCTCAGGGCGATCCTATCAAGGAAGATCCTTCTGTGCCCTCGACCTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GTCAGATGCATGGCTCAGGGCGATCCTATCAAGGAAGATCCTTCTGTGCCCTCGACCTCG 267
Query 181 ACTTCGGCCGCTCCGCCGCAAATGCCACCGTCTCCTCCTCCACCAGTTAGCAAGCCTAAG 240
||||||||| |||| || |||||||||| |||||||||||||||||||||||||||||||
Sbjct 268 ACTTCGGCCACTCCACCACAAATGCCACAGTCTCCTCCTCCACCAGTTAGCAAGCCTAAG 327
Query 241 GTGAGTACGAAGTTTGGAGATTTACTAGCATTTAGCGGTCCAGCACCTGAGAGGATCAAC 300
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 328 GTGAGTACGAAGTTTGGAGATTTGCTAGCGTTTAGCGGTCCAGCACCCGAGAGGATCAAC 387
Query 301 GGGAGACTAGCAATGGTTGGATTCGTGGCGGCCATCGCCGTGGAGTTGTCAAAGGGAGAA 360
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 388 GGGAGACTAGCAATGGTTGGATTCGTGGCGGCCATCGCCATGGAGTTATCAAAGGGAGAA 447
Query 361 AACGTGTTTGCTCAGATCTCTGACGGTGGCGTTGGGTGGTTTCTTGGAACAACAGCGTTG 420
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 448 AACGTGTTTGCTCAGATCTCTGACGGTGGTGTCGGGTGGTTTCTAGGAACAACAGCGTTG 507
Query 421 CTGACGTTGGCATCGATGGTTCCGTTGTTCAAGGGAATAAGAGCAGAGTCAAAGTCAAAA 480
|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 508 TTGACGTTGGCATCGATGGTTCCGTTGTTCAAGGGAATAAGGGCAGAGGCAAAGTCAAAA 567
Query 481 GGGTTCATGACCTCAGACGCCGAGCTATGGAACGGTCGGTTCGCTATGCTTGGTCTCGTT 540
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 568 GGGTTCATGACTTCAGACGCCGAGCTATGGAACGGTCGGTTTGCGATGCTCGGTCTCGTT 627
Query 541 GCGTTGGCCTTCACTGAGTACGTCACTGGTGGGACTCT 578
|||||||||||||| |||||||||||||||||||||||
Sbjct 628 GCGTTGGCCTTCACCGAGTACGTCACTGGTGGGACTCT 665
> AT4G14695.1 | Symbols: | Uncharacterised protein family (UPF0041)
| chr4:8419799-8420998 FORWARD LENGTH=517
Length=517
Score = 617 bits (334), Expect = 5e-176
Identities = 350/358 (98%), Gaps = 0/358 (0%)
Strand=Plus/Plus
Query 594 GAGAAAAGAGAATCTCCGAGGAAAACAAAAGTTGATGGCGACGGCTAAGCTTCAAGCTCT 653
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GAGAAAAGAGAATCTCCGAGGAAAACAAAAGTTGATGGCGACGTCTAAGCTTCAAGCTCT 60
Query 654 CTGGAATCACCCGGCAGGACCAAAGACGATTCATTTCTGGGCTCCAACATTTAAATGGGG 713
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 61 CTGGAATCACCCGGCAGGACCAAAGACAATTCATTTCTGGGCTCCAACATTTAAGTGGGG 120
Query 714 TATAAGCATTGCTAACATTGCAGATTTCCAAAAACCTCCAGAAAATATTTCATACCTTCA 773
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 121 TATAAGCATTGCTAACATTGCAGATTTCCAGAAACCTCCAGAAAATATTTCGTACCTTCA 180
Query 774 GCAAATTGCTGTGACATGCACTGGAATGATTTGGTGTCGTTGCAGCACTGTAATTACTCC 833
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 GCAAATTGCTGTGACATGCACTGGAATGATTTGGTGTCGTTGCAGCACTATAATTACTCC 240
Query 834 TAAAAACTGGAACCTGTTTAGTGTTAATGTTGCTATGGCAGCTACAGGGATATACCAACT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAAAAACTGGAACCTGTTTAGTGTTAATGTTGCTATGGCAGCTACAGGGATATACCAACT 300
Query 894 TGCTCGCAAAATAAAGTATGATTATGTATCTGAAGCTGAGGCTGCTGTTGAAATTGAA 951
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 TACTCGCAAAATAAAGTATGATTATGTATCTGAAGCAGAGGCTGCTGTTGAAATTGAA 358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46667522563
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5