BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331043 Length=2280 Score E Sequences producing significant alignments: (Bits) Value AT5G43630.1 | Symbols: TZP | zinc knuckle (CCHC-type) family pr... 2342 0.0 > AT5G43630.1 | Symbols: TZP | zinc knuckle (CCHC-type) family protein | chr5:17526751-17530516 FORWARD LENGTH=2934 Length=2934 Score = 2342 bits (1268), Expect = 0.0 Identities = 1496/1605 (93%), Gaps = 19/1605 (1%) Strand=Plus/Plus Query 681 GCTGAAGCAAGATAGTTCCTTCATGAATTGGATATCAAACATGACAAAAGGGATCTGGAA 740 ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1017 GCTCAAGCAAGATAGTTCCTTCATGAATTGGATATCAAATATGACTAAAGGAATCTGGAA 1076 Query 741 AGGTAATGAAGAAGACGATTCTCCTTTTGCAGCTCTTACCACCACCTCAGATGCTAATGG 800 |||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1077 AGGTAATGAAGAAGACAATTCTCCTTTTGTAGCTCTTACCACCACCTCAAATGCTAATGG 1136 Query 801 TCATGGCCAAGTCAATGCAATCGTTGACCAACAACAATTGAGTCCATGCTGTGTGAAGGA 860 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TCATGGCCAAGTCAATGCCATCGTTGACCAACAACAATTGAGTCCATGCTGTGTGAAGGA 1196 Query 861 AAATAGTGGATGCAGAAACACTGGTTTCCAGTCTTTTTTCCAGTCTATATATTGTCCGAA 920 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1197 AAATAGTGGATGCAGAAACACCGGTTTCCAGTCTTTTTTCCAGTCTATATATTGTCCGAA 1256 Query 921 GAAACGAAGTCAAGATGCCGTCGAGATGGATTTCCCGAATGATGCTAATGCTACTTCTTT 980 ||||| ||||||||||| |||||| ||||||||||||||||||| ||||||| || |||| Sbjct 1257 GAAACAAAGTCAAGATGTCGTCGACATGGATTTCCCGAATGATGTTAATGCTGCTCCTTT 1316 Query 981 GCAGGAACTTCCCTGGATTCCTGAACAATGTGACATTGCCAAAGGGGATGACTTGTCTTC 1040 ||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||| Sbjct 1317 GCAGGAACTTCCCTGGATTCCTGAACATTGCGACATTTCCAAAGGGGATGACTTGTCTTC 1376 Query 1041 ATCTGGTAATGATATTGGTCCAGTGGCTGAACCCAACATTTCATCAGGAAAAGTTGGATT 1100 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1377 ATCTGGTAATGAGATTGGTCCAGTGGCTGAACCCAACATTTCATCAGGAAAAGTTGTATT 1436 Query 1101 TAATCAGAGAAGCGAAACACTCTCGTCAGAGAACAAACGTGAGGACAAAGAACCAAACAT 1160 |||||||| |||| |||||| || |||||||||||||||||||||||||| |||||||| Sbjct 1437 TAATCAGACAAGCAAAACACAGTCTTCAGAGAACAAACGTGAGGACAAAGAGCCAAACAT 1496 Query 1161 CTCTTTGATGTCTCTTAGTAAGTCTAAGCCAAATGAAGAGCCAAAAATC-TGCGGTGAAG 1219 ||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1497 CTCGTTGATGTCTCTTAGTAAGTCTAAGCCAAATGAAGAGCCAAAAA-CATGCGGTGAAG 1555 Query 1220 CTGGTGGAAAGGTTAGTCCATGTTTAAACAACAGAAACTCTGGTCTTCAAAGTTTGTGGA 1279 ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 1556 CTGATGGAAAGGTTAGTCCATGTTTAACCAACAGAAACTCTGGTCTTAAAAGTTTGTGGA 1615 Query 1280 TAAGCCGGTTTTCTTCTAAAAGTCCGTTCCCTCAGAAAAAGACCAGTGAAACGGCTAAAG 1339 | || ||||||||||||||| || ||||||||||||||||| | |||||||||||||||| Sbjct 1616 TTAGTCGGTTTTCTTCTAAAGGTTCGTTCCCTCAGAAAAAGGCAAGTGAAACGGCTAAAG 1675 Query 1340 AGGTCAATGCTTCAGCCTCAGACACAGCTAAAACCCATGATTCGCAGAAAATGCTGGTAA 1399 ||| ||||||||||||||||||| |||||||||||| |||||| | ||||||||||| | Sbjct 1676 AGGCCAATGCTTCAGCCTCAGACGCAGCTAAAACCCGTGATTCACGGAAAATGCTGGCAG 1735 Query 1400 ATAATAATGTTGTAATACCCAGTATCAGCTCGGTAGATGGGCTCGATAAACCGAACACTG 1459 | || |||||| ||| |||||||||||||||||||||||||| |||||||||| |||||| Sbjct 1736 ACAAGAATGTTATAAGACCCAGTATCAGCTCGGTAGATGGGCCCGATAAACCGGACACTG 1795 Query 1460 TCCTTCCCATAGTTTCGTCAATGAGAATAGAGTCTTCAGAAGCAATGGCTTCTTTGTTTG 1519 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1796 TCCTTCCTATAGTTTCGTCAATGAGAATAGAGTCTTCAGAAGCAATGGCTTCTTTGTTTG 1855 Query 1520 CTAGAAGGAT-AGAAGCAATGAAACA-CATCATACCCGCAGGTTCTTTAGCTGAGAATGC 1577 ||||||| || ||||||||||||| | |||||| ||| |||||||||||||||||||||| Sbjct 1856 CTAGAAG-ATTAGAAGCAATGAAA-AGCATCATGCCCTCAGGTTCTTTAGCTGAGAATGC 1913 Query 1578 AGAGGAGGAACAGCCAAATCTAATCTGTTTCTACTGCGGTAAAAAGGGTCATTGTTTACA 1637 ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1914 AGAGGAGGAACAGAGGGATCTAATTTGTTTCTACTGCGGTAAAAAGGGTCATTGTTTACG 1973 Query 1638 GGATTGTTTGGAAGTAACTGATACTGAGCTCAGAGATCTAGTACAGAACATAAGT-TCTC 1696 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1974 GGATTGTTTGGAAGTAACTGATACTGAGCTCAGAGATCTAGTACAGAACATAAGTGTG-C 2032 Query 1697 GGAATGGAAGAGAAGAAGCGTCAAGTCTATGCATTAGATGTTTTCAGCTAAGTCACTGGG 1756 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2033 GGAATGGAAGAGAAGAAGCGTCAAGTCTATGCATTAGATGTTTTCAGCTTAGTCACTGGG 2092 Query 1757 CTGCAACATGCCCGAATGGTCCACTGTATAGTTCAGGAGCTGAAGATAGAGCTATGAAGC 1816 |||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||| Sbjct 2093 CTGCAACATGCCCGAATGCTCCCCTGTATGGTTCAGGAGCTGAAGGTAGAGCTATGAAGA 2152 Query 1817 ACACTTTAGCTTCTACCTCTGGCATGAAGCTGCCCGTAAGTGGTTTCACAGATGTACCAA 1876 || |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 2153 ACGCTTTAGCTTCTACCTCTGGCATGAAGCTGCCCATAAGTGGTTTCACAGACGTACCAA 2212 Query 1877 AGGCGGTCTTTGAGGCTGTTCAAGTGCTTCGCCTCAGCCGCACAGACGTTCTCAAATGGA 1936 |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2213 GGGCGGTCTTTGATGCTGTTCAAGTGCTTCGCCTGAGCCGCACAGACGTTCTCAAATGGA 2272 Query 1937 TAAACACCAAGAAGTCTTTATCGGGTCTCGAAGGGTTTTTCTTGCGGTTAAGGCTCGGGA 1996 ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 2273 TAAACACCAAGAAGTCTGTATCGGGTCTCGAAGGGTTCTTCTTGCGGTTAAGGCTCGGGA 2332 Query 1997 AATGGGAAGAAGGTCTTGGAGGAACAGGGTACTACGTAGCCCGCATAGATG---A----G 2049 ||||||||||||| ||||||||||||||||| || ||||| |||||||||| | | Sbjct 2333 AATGGGAAGAAGGGCTTGGAGGAACAGGGTATTATGTAGCTCGCATAGATGGGGACACAG 2392 Query 2050 -GG-ACAAAGCTCAAGGAGACATTCAGAGAAAAGCTCAATCTCAGTTAAGGTTAAAGGGG 2107 || |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | Sbjct 2393 AGGGACAAAGCTCAAGGAGACATTCAGAGAAAAGCTTAATTTCAGTTAAGGTTAAAGGTG 2452 Query 2108 TGACTTGCCTTGTTGAGTCTCAGTTTATCTCAAACCACGACTTTCTTGAGGAGGAGTTGA 2167 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 2453 TGACTTGCCTTGTTGAGTCTCAGTTTATCTCAAACCAAGACTTTCTTGAGGAGGAGTTAA 2512 Query 2168 AGGCGTGGTGGCGGAGCGCGGGGAAAAGTGCC-GAAAGAAGCGGCTGCGAGGGCATCCCA 2226 |||| ||||||| ||||||||||||||||||| ||| |||||||| ||| |||||||| Sbjct 2513 AGGCCTGGTGGCAGAGCGCGGGGAAAAGTGCCAGAAC-AAGCGGCTACGACGGCATCCCG 2571 Query 2227 TCGGCAGAGGAACTTAGTCGGAAAATTCAGCAGAGAAAGATGTTA 2271 ||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 2572 TCGGCGGAGGAACTTAGTCGGAAAATTCAGCAGAGAAAAATGTTA 2616 Score = 808 bits (437), Expect = 0.0 Identities = 616/695 (89%), Gaps = 42/695 (6%) Strand=Plus/Plus Query 1 ATGGGAGATGGAGATGAGCAAAGTAAAGAGTTAGAAGGACTCTCGTCTTCGAGTCGTC-- 58 |||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| Sbjct 130 ATGGGAGATGGAGATGAGCAAAGTAAAGAGTTAGGAGGAGTTTCGTCTTCGAGTCGTCGT 189 Query 59 -GTTCTTCGGGT-C--CTAGTTCTGCAAATGCAGAGGCAAGAATGAAGTTTGCTTCTGTT 114 ||||||| ||| | || || ||||||||||||| |||||||||||||||||| ||||| Sbjct 190 TGTTCTTCCGGTACTGCTGGTGCTGCAAATGCAGAAGCAAGAATGAAGTTTGCTGCTGTT 249 Query 115 GATGCTATAACAGAATTAGTGTGGTCTCCTGGAAACGGTCTAAGCTTAAGATGTGCAGAT 174 |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 250 GATGCTATAACAGAATTAGTGTGGTCTCCTAGCAACGGTCTAAGCTTAAGATGTGCAGAT 309 Query 175 ATCAGTTTCACGGGAAAAGCAAAATTAGTCTCTCCTAACTTCTTTGATATAGGACTAACC 234 ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 310 ATCAGTTTCACGGGAAAGGCAAAATTACTCTCTCCTAACTTCTTTGATATAGGACTAACT 369 Query 235 AATATGGCGATTCATTCGAATAGTACAAGTATCGAACACC---AAG---A---AGATGTC 285 || ||||||||||| || ||||| |||||||| ||| ||| ||| | ||||||| Sbjct 370 AACATGGCGATTCACTCAAATAGCACAAGTATTGAAGACCAAGAAGATCACGTAGATGTC 429 Query 286 GAATTGAGAAGCCGAGATCAAGTGAACCAAGAAAGGATTGGTGGTTCTGTTGAGGATATG 345 |||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 430 GAATTGAGAAACCGAGATCAAGTGAACCAAGCAATGATTGGTGGTTCTGTTGAGGATATG 489 Query 346 AAACCTGAAATGGTTGAGGATAAGGTTGAAACCAATGATGATATAAAGAATGAAGTAGCA 405 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 490 AAACCTGAAATGGTTGAGGATAAGGTTGAAACCAATGATGATATAAAGAATGAAGAAGCA 549 Query 406 GGAAGTTCCAAAAGATCGTCAGATAGTCCGAAAGCTATGGAAGGAGAAACCAGAGACTTG 465 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 550 GGATGTTCCAAAAGATCTTCAGATAGTCCGAAAGCTATGGAAGGAGAAACCAGAGACTTG 609 Query 466 TTGGTGAATGAACAGTTGAGGATGGAAAGTGCTGGATCTCAAGAAGGACCGACTAACCGT 525 ||||| |||||||||||||||||||||||||||||||||||||||| | | | Sbjct 610 TTGGTTAATGAACAGTTGAGGATGGAAAGTGCTGGATCTCAAGAAG-A---A------G- 658 Query 526 GGAGATAAAGATGAAGGGGATAAGGCGAATAATAGAATTGATCGTTTAGAATCAATGGAT 585 || ||||| | | | |||| || || ||||||||||||||||||||||| Sbjct 659 GG-GATAA-G--GC-GC--ATAA------TAG-AG--TTGATCGTTTAGAATCAATGGAT 702 Query 586 GAGAATAACCTTGCAACTCTTGCTGTTGTAGCATGTGAAGGCAAAGGGGAATATTCACCG 645 ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||| ||| Sbjct 703 GAGAACAACCTCGCAACTCTTGCTGTTGTAGCATGTGAAGGTAAAGGGGACTATTTGCCG 762 Query 646 GAGAATGAGGCTGGACCTAGTGGTTCCTACAGGCG 680 ||| |||||||||||||||||||||||||||||| Sbjct 763 GAGGGTGAGGCTGGACCTAGTGGTTCCTACAGGCG 797 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 113152028430 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5