BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331125
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42760.2 | Symbols: | Leucine carboxyl methyltransferase | ... 1557 0.0
> AT5G42760.2 | Symbols: | Leucine carboxyl methyltransferase
| chr5:17148808-17150451 FORWARD LENGTH=1339
Length=1339
Score = 1557 bits (843), Expect = 0.0
Identities = 939/987 (95%), Gaps = 0/987 (0%)
Strand=Plus/Plus
Query 1 ATGTCCGAAATAGAAAAGCAAAAGCCGGAAGAGGAAGAATCATCGAGGACATGGCCGGAT 60
||||| |||||||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 158 ATGTCTGAAATAGAAAAGCAAAAGCCGGAAGAAGAAGAATCATCCACGACATGGCCGGAT 217
Query 61 ATCGAAGAAGAACTCGTGATACCCGATGTTTTACATAGTGAAGGTGTGAAGAAACTTCAT 120
|||||||||||||||||| | |||||||| |||| ||||||||| ||||||||||| |||
Sbjct 218 ATCGAAGAAGAACTCGTGCTTCCCGATGTGTTACGTAGTGAAGGCGTGAAGAAACTGCAT 277
Query 121 ATGAGTATTCAAAGTGAGTGGGATTACCTTCAGAAGTCTGCTTGTCAAACAGCTGCAGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 ATGAGTATTCAAAGTGAGTGGGATTACCTTCAGAAGTCTGCTTGTCAAACAGCTGCAGGA 337
Query 181 AGAGCTTTGTGGAAACATGTTATTCATGATCCGCTCGCTCATTTGTTTGCTGGAGAGACA 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 338 AGAGCTTTGTGGAAACATGTTATTCATGATCCGCTTGCTCATTTGTTTGCTGGAGAGACA 397
Query 241 CATTTGAGAAACCTACACACAAAGATTCAGACTGACCGTCTCAACAATGCTCGAGAGATT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 398 CATTTGAGAAACCTACACACAAAGATTCAGACTGACCGTCTCAACAATGCTCGAGAGGTT 457
Query 301 TCCGGTGTGATTCTAGCCGTTCGAACTCTCTGGTTTGATACAAGGATTCAAGCTGCTCTG 360
|| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 458 TCTGGTGTGATCCTAGCCGTTCGAACTCTCTGGTTTGACACAAGGATTCAAGCTGCTCTG 517
Query 361 GAGTCTTTCGAAAGTGATGCAGCTCAGGTTGTGCTACTCGGTGCAGGAATGGATGCGAGA 420
||||||||| | | |||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 518 GAGTCTTTCCACGGCGATGCAGCACAGGTTGTTCTACTTGGTGCAGGAATGGATGCAAGA 577
Query 421 TCATACCGACTAAACTGCTTGAACAAAAGCGACGTATTTGAAGTGGATTTTCAAGATGTT 480
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 578 TCATACAGACTAAACTGCTTGAACAAAAGTGACGTATTCGAAGTGGATTTTCAAGATGTT 637
Query 481 TTGGAAACAAAAGCGAGCCTAGTTCAAGCTGCAGTAAACTCTAGAGATGATCTTCGGATG 540
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 638 TTGGAAACCAAAGCGAGCCTAGTTCAAGCTGCAGTAAACTCTAGAGATGAGCTTAGGATG 697
Query 541 ACAGCGAAATCACTAGTCAGAGTAGCAATTGATATCAGAGACAACGATTGGTTTGAACAC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ACAGCGAAATCACTAGTCAGAGTAGCAATTGATATCAGAGACAACGATTGGTTTGAACAG 757
Query 601 CTTAAGAAATCGGGTTTTCTGCCAGAGATTAACACCGTATGGGTTCTTGAAGGTATTCTT 660
||||| ||||| |||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 758 CTTAAAAAATCAGGTTTTTTGCCAGAGATTAACACGGTATGGGTTCTCGAAGGTATTCTC 817
Query 661 TATTACCTGTCTCACACAGAGGCAATGCAAGTACTGAAGCTCATAGCTGATAAGTGTGCA 720
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |
Sbjct 818 TATTACCTGTCTCACACAGAGGCAATGCAAGTACTAAACCTCATAGCTGAGAAGTGTGGA 877
Query 721 CTAACCAGCACAGTTCTCTTGGCGGATTTCATGAACAAACCGTCTGCTACACTGCCAAAC 780
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 878 CTAACCAGCACAGTTCTCTTGGCGGATTTCATGAACAAACCATCAGCTACACTTCCAAAC 937
Query 781 TCTGTGTTCCACTTCTACAGTGACTGGCCTGATCAGCTCTTACCATCATTGGGATTCTCT 840
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 938 TCTGTGTTCCACTTTTACAGTGACTGGCCTGATCAGCTCTTACCAACTTTGGGATTCTCT 997
Query 841 CATGTCAAGCTTTCACAGATAGGTGATCCAGATGCGAATTTCGGTCTGCTCCACGATCCA 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 CATGTCAAGCTTTCACAAATAGGTGATCCAGATGCGAATTTCGGTCTGCTCCACGATCCA 1057
Query 901 CGGAATCTCTTCAACAAACTTCTTCGCCTGCCAAGGACTGCACAAATCCATCCAGATGAT 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1058 CGGAATCTCTTCAACAAACTTCTCCGCCTGCCAAGGACTGCACAAATCCATCCAGATGAT 1117
Query 961 GGAAAACCATGCTGCCGTTTGTATTTG 987
|||||||||||||||||||||||||||
Sbjct 1118 GGAAAACCATGCTGCCGTTTGTATTTG 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51339298234
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5