BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331132 Length=1626 Score E Sequences producing significant alignments: (Bits) Value AT5G42690.2 | Symbols: | Protein of unknown function, DUF547 |... 2296 0.0 > AT5G42690.2 | Symbols: | Protein of unknown function, DUF547 | chr5:17116428-17119838 REVERSE LENGTH=2102 Length=2102 Score = 2296 bits (1243), Expect = 0.0 Identities = 1494/1616 (92%), Gaps = 13/1616 (1%) Strand=Plus/Plus Query 16 agcagtagcagtagtaatagtagtagtagcTATACAAGATGCGTTAAAACTCCATCATCT 75 |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 293 AGCAGTAGCAGTAGTAATGGTAGTAGTAGTTATACAAGATGCGTTAAAACTCCATCATCT 352 Query 76 GCAATTACGGAA-ATTGGGAAGAATGTGAAAGCTGGTGAAAATGGTGTTGGAAACCGAAA 134 ||| ||| || ||||||||||| |||||| | ||||||||||||||| ||| ||||| Sbjct 353 ACAAATAC-TAACATTGGGAAGAAACTGAAAGGTTGTGAAAATGGTGTTGTAAATCGAAA 411 Query 135 GGCCTTAAATCGAGAGAAGATAATTGCTCTGCAACAAGATGTTGAGAAGCTAAGGAAGAA 194 ||| ||||||||||||||||||||| |||||||| |||||||||| ||| | || ||||| Sbjct 412 GGCGTTAAATCGAGAGAAGATAATTACTCTGCAAGAAGATGTTGAAAAGTTGAGAAAGAA 471 Query 195 GCTTAGACTTGAAGAGAACATTCGCCGAGCAATGGAAAGAGCATTTAATAGACCTCTCGG 254 ||| ||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||| || Sbjct 472 GCTGAGACTTGAAGAAAACATTCACCGAGCAATGGAAAGAGCATTTAGTAGGCCTCTTGG 531 Query 255 AGCACTTCCCCGCCTTCCTCCGTTTCTCCCTCCATCGATTTTGGAGTTACTTGCGGAAGT 314 |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 532 AGCACTTCCCCGTCTTCCTCCGTTTCTACCTCCATCGGTTTTGGAGTTACTTGCGGAAGT 591 Query 315 GGCTGTTATGGAGGAAGAAATGGTTCGGTTAGAAGAATATATTGTCCATTGTAGACAAGA 374 ||||||| |||| || ||| ||||||||||||||||| ||||||| |||||||||||||| Sbjct 592 GGCTGTTTTGGAAGAGGAATTGGTTCGGTTAGAAGAACATATTGTGCATTGTAGACAAGA 651 Query 375 ATTGTATCAAGAAACAGCTTTTACATCTTCATCCATAGCGAACTTAAAATGCTCTGCTG- 433 ||||||||||||| ||| ||||||||||||||| |||| ||| |||||||||||| ||| Sbjct 652 ATTGTATCAAGAAGCAGTTTTTACATCTTCATCGATAGAGAATTTAAAATGCTCTCCTGC 711 Query 434 ATTTGCCTAAGAATTGGCAGAGCAAATCTAAGTCAGCTGCCAGTAATGCTAGAGAATCTG 493 |||| |||||| ||||||||| |||||| ||||||||| ||| || |||||||||||| | Sbjct 712 ATTT-CCTAAGCATTGGCAGACCAAATCCAAGTCAGCTTCCACTAGTGCTAGAGAATCAG 770 Query 494 AATCACCTCGTTT-GCGGGAACCGCGTTCTGTTTCAGAGAGTCGGAGGGGTAAAGAGAAC 552 ||||||||| ||| |||| ||| |||||||||||| | || ||| ||||||||| ||| Sbjct 771 AATCACCTC-TTTCACGGGCACCTTGTTCTGTTTCAGTGTGTAGGAAGGGTAAAGAAAAC 829 Query 553 AAGTTGAGTGCTACTTCTATCAAAACGCCGATAAAGAAAATGACTATTTTGGCTCATACA 612 |||||||||||||||||||||||||| ||||| ||||||| ||||| || ||||||||| Sbjct 830 AAGTTGAGTGCTACTTCTATCAAAACACCGATGAAGAAAACGACTA--TT-GCTCATACA 886 Query 613 CAACTTAATAAGAGTTTAGAAGCTCAGAAACTTGAGCAGGAAAGTCATAGATGTCGCAAA 672 ||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||| Sbjct 887 CAACTGAATAAGAGTTTAGAAGCTCAAAAACTAAAGCAGGATAGTCATAGATGTCGCAAA 946 Query 673 ACAAATGCAGAGCGGAGCTCTCATGGTGGGGGTGATGACCCAAATAAAATTTCCGAGGAT 732 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 947 ACAAATGCAGAGCGGAGCTCTCATGGTGGCGGTGATGAACCAAATAAAATTTCCGAGGAT 1006 Query 733 TTGGTTAAATGTTTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCGCGGTT 792 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1007 TTGGTTAAATGTCTGTCTAACATTTTCATGAGAATGAGCTCAATAAAGAGATCCATGGTT 1066 Query 793 ACGAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGACCCTTATGGAATTTGCTCC 852 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1067 ACAAAATCTCAAGAAAACGATAAAGATACGGCATTCAGGGATCCTTATGGAATTTGCTCT 1126 Query 853 AGCTTTAGTAGAAGAGATATTGGTCCTTATAAGAATTTCAGTGATGTTGAAGCAGCTTCA 912 || ||||| ||||| |||||||||| ||||||||||||||||||||||||| ||| ||| Sbjct 1127 AGTTTTAGAAGAAGGGATATTGGTCGATATAAGAATTTCAGTGATGTTGAAGAAGCCTCA 1186 Query 913 GTAAATCAAAATAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGTCAACTGAAACG-TCT 971 | || ||||| |||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 1187 CTTAACCAAAACAGAACGTCAAGTTCCTCTTTGTTTCTCATCCGCCAACTGAAACGAT-T 1245 Query 972 GCTTGGAAAACTTTCTTCAGTCAACTTGCAGAAACTTAATCAACAAGAGAAGTTAGCTTT 1031 |||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1246 GCTTGGAAGACTTTCTTTAGTCAACATGCAGAAACTTAATCAACAAGAGAAGTTAGCTTT 1305 Query 1032 CTGGATAAACATTTATAACAGCTGCATGATGAATTGTTTCCTTGAACATGGAATACCGGA 1091 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1306 CTGGATAAACATTTATAACAGCTGCATGATGAATGGTTTCCTTGAACATGGAATACCGGA 1365 Query 1092 GAGCCCTGATATGGTGACACTAACGCAAAAGGCGACTATAAATGTGGGAGGCCACTTTCT 1151 ||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| Sbjct 1366 GAGCCCTGATATGGTGACATTAATGCAAAAGGCGACTATAAATGTAGGAGGCCACTTTCT 1425 Query 1152 CAATGCAAGCACAATCGAACACTTCATCCTCCGCTTACCGTATCACTCAAAATATATTTC 1211 |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1426 CAATGCAATCACGATCGAACACTTCATCCTCCGCTTACCGCATCACTCAAAATATATTTC 1485 Query 1212 TCCAAAGGGATCAAAGAAAAATGAAATGGCAGTGAGTAGTAAATTTGGATTGGAATTGTC 1271 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1486 TCCAAAGGGTTCAAAGAAAAATGAAATGGCAGTGAGAAGTAAATTTGGATTGGAATTGTC 1545 Query 1272 AGAGCCACTTGTAACATTTGCTCTCTCATGTGGTACCTGGTCCTCACCCGCGGTAAGGGT 1331 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 1546 AGAGCCACTTGTAACATTTGCTCTCTCATGTGGTAGCTGGTCCTCACCCGCGGTACGGGT 1605 Query 1332 GTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCAAAAAGAGAGTACCTAGAAGC 1391 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1606 GTACACTGCGAGTAAAGTAGAGGAGGAGTTGGAGGTGGCGAAAAGAGAGTACCTAGAAGC 1665 Query 1392 ATCCGTGGGGATATCCGTGGCGAAAATGGGGATACCGAAA-CTGATGGATTGGTATAGTC 1450 ||| ||||||||||| |||| |||||| |||||||| ||| ||||||||||||||||||| Sbjct 1666 ATCGGTGGGGATATCGGTGGTGAAAATAGGGATACC-AAAGCTGATGGATTGGTATAGTC 1724 Query 1451 ATGACTTTGCAAAGGACATTGAATCATTACTTGATTGGATTTGCCTTCAGTTGCCTACTG 1510 |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 1725 ATGACTTTGCAAAGGACATTGAATCATTGCTTGATTGGATTTTCCTTCAGTTGCCTACTG 1784 Query 1511 AGTTGGGGAAAGATGCTCTCAACTGTGTTCAACAAGGGATGTCTCAGCCCCCTTCTTCTA 1570 ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 1785 AGTTGGGTAAAGATGCTCTCAACTGTGTTGAACAAGGGATGTCTCAGTCCCCTTCTTCTA 1844 Query 1571 CTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATACCTTTTTTCGATCTGA 1626 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1845 CTCTTGTCCATATTATCCCTTATGACTTCACTTTTAGATATCTTTTTTCCATCTGA 1900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80320872000 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5