BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331396
Length=2124
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49945.1 | Symbols: | Protein of unknown function (DUF1682)... 2183 0.0
AT5G49940.1 | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 | ch... 1064 0.0
> AT5G49945.1 | Symbols: | Protein of unknown function (DUF1682)
| chr5:20317405-20319830 FORWARD LENGTH=1854
Length=1854
Score = 2183 bits (1182), Expect = 0.0
Identities = 1343/1420 (95%), Gaps = 14/1420 (1%)
Strand=Plus/Plus
Query 709 CTCTTCCTCCATTATCGTATCATCGTAGCTTCACAATTCGAAGGATTTGATGCTGAAGAA 768
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||
Sbjct 47 CTCTTCCTCCATTATCGTATTATCGTAGCTTCTCCATTCGAAGGATTTGATGCTGAAGAA 106
Query 769 GACGATGTTTCCGACGATtcctctcaccttcctcaccactccctccctccgcctcttctc 828
||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 107 GACGACGTTACCGACGATTCCTCTCACCTTCTTCACCACTCACTCCCTCCGCCTCTTCTC 166
Query 829 actcagtctcactcatcactctccGATCTGGAACCGGAACCGGAACCGGAATCTTCTTCT 888
|||||||||||||||||||||||||||| || || ||||| |||||| |||||||
Sbjct 167 ACTCAGTCTCACTCATCACTCTCCGATC-----CC-GATCCGGAGCCGGAACCTTCTTCC 220
Query 889 GCCGAATCTAACTCTGATCTCATCTCTGAATCAGATCCCGAGCATGAATCCGATTCGAGA 948
||||||| ||| || ||||||||| |||||||||||| ||||||| |||||||||||| |
Sbjct 221 GCCGAATGTAAATCCGATCTCATCACTGAATCAGATCTCGAGCATCAATCCGATTCGAAA 280
Query 949 ACTCCCTCGTCTACGCCATTTGAGTACTGGGACGAAGACGAGTTCGAGGGACTACCGA-T 1007
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 281 ACTCCCTCGTCTACACCATTTGAGTACTGGGACGAAGACGAGTTCGAAGGACTACC-AGT 339
Query 1008 TGAGATAGAGACACTTGAATCTCCATTGATTGCAGAAAACGCAACTCATACTGATCCAAA 1067
||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 340 TGAGATAGAGACACTTGAATCTCCATTGATTACAGAAAACGGAACTCATGCTGATCCAAA 399
Query 1068 GACGCTAGATCTCAAGACTTCATCGGAACCTCAAGAAGTA-ACTACTGATCAGATGAAGA 1126
||||| |||||||||||||||||||||| |||||| || | |||| |||||| | |||||
Sbjct 400 GACGCCAGATCTCAAGACTTCATCGGAAGCTCAAGGAG-ACACTAATGATCAAACGAAGA 458
Query 1127 AGAAGAAGTCGTACGCGGTGGAGATCGCTTGCGTCGT-TTTCTTAATCGCTCTCGCAATC 1185
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 459 AGAAGAAGTCGTACGCGGTGGAGATCGCTTGCGTC-TGTTTCTTAATCGCACTCGCAATC 517
Query 1186 AACTACTTCGTTGGTAAACGTGAGAACGAGAGTCTCGCTTTAGCTTGGGCGGCGAAATTC 1245
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 518 AACTACTTCGTTGGTAAACGTGAGAACGAGAGTCTCGCATTAGCTTGGGCGGCGAAATTT 577
Query 1246 GCTTCCAAGGGTACTATATTCCAGAAGAATTTTAGTTTGCTTGGAGTTAGTGAAGGAGAG 1305
||||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 578 GCTTCTAAGGATACAATATTCCAGAAGAATTTTAGTATGCTTGGAGTTAGTGAATTAGAG 637
Query 1306 GATTCGCCATTGTTGTTGAAAGAAGCGTTAAATGTGTTTAAATTCTACGCGAGTGGTCGT 1365
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 638 GATTCGCCATTGTTGTTAAAAGAAGCCTTAAATGTGTTCAAATTCTACGCGAGTGGTCGT 697
Query 1366 AGGTATTGCCATGGATTGTTAGCTACTATGGAGCTTAAGAGTAGACATGATTTGATCTCT 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 AGGTATTGCCATGGATTGTTAGCTACTATGGAGCTTAAGAGTAGACATGATTTGATCTCT 757
Query 1426 AGGATGTTTAATTTGGTGGTTCCTTGTAAAGATGAGATCACTTTTGAGGTTTATATGAAT 1485
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 AGGGTGTTTAATTTGGTTGTTCCTTGTAAAGATGAGATCACTTTTGAGGTTTATATGAAT 817
Query 1486 GAAGATACTATGGATCATGTTGTGTTTGCGATGGCGAGGAAAAAGGCTGCGAAAACTATG 1545
||||| ||||||||||||||||||||||| ||| ||| ||| |||||||| |||||||||
Sbjct 818 GAAGAAACTATGGATCATGTTGTGTTTGCTATGACGAAGAAGAAGGCTGCAAAAACTATG 877
Query 1546 CAAAAGGAGATGAGGGATTTGCAGAGATTCACTGGGATTGTGTCTCCTCCTGCTGGGAGG 1605
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||
Sbjct 878 CAAAAGGAGATGAGGGATTTGCAAAGATTTGCTGGGATTGTGTCTCCTCCTGCTGGAAGG 937
Query 1606 AAATGGGTGTCGGAGGAGTTAG-CTGTGATCTCTGAATCCAAGGAAGTTGCTGCGGATAT 1664
|||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 938 AAATGGGTGTCGGAGGAGTTCGCCT-TGATCTCTGAATCCAAGGAAGTTGCTGCGGATTT 996
Query 1665 GATCACTGACACTGTTCTTGATCAGGTTTTTGGTGACAAGGCTGTGGATAAGTATGGGAA 1724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 GATCACTGACACTGTTCTTGATCAGGTTTTTGGTGACAAGGCTGTGGATAAGTATGGGAA 1056
Query 1725 GAATTTCATGTCGATGCATATATCTGACCAACACCCTGGCAAGCACAAGAAGATGATGCT 1784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GAATTTCATGTCGATGCATATATCTGACCAACACCCTGGCAAGCACAAGAAGATGATGCT 1116
Query 1785 TTTCAAGTTTTCCTTACCCGATGCTAAACATATGGATGATATTGTCCGCTTGGTGGCGCT 1844
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1117 TTTCAAGTTTTCTTTACCTGATGCTAAACATATGGATGATATTGTCCGGTTGGTGGCGCT 1176
Query 1845 AATTCCATATTACATCGACTTAGTAGGTCGATACAGACTCAGCTCCCAGGCGCGGAACAA 1904
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1177 AATTCCATATTACATCGACTTAGTAGGACGATACAGACTCAGCTCGCAGGCGCGGAACAA 1236
Query 1905 AACTGAGAGTGGTAGGCAAAAGGCAGCAGAGGAAGCATACAAGGAACTTCAGAACGCGAG 1964
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1237 AACTGAGAGTGGTAGGCAAAAGGCAGCAGAGGAAGCATACAAGGAACTTCATAACGCGAG 1296
Query 1965 GCAAGAGGCATTGCagaagaagaaagcagaaaagaagaaaatgatggaggaagcggaagc 2024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 GCAAGAGGCATTGCAGAAGAAGAAAGCAGAAAAGAAGAAAATGATGGAGGAAGCGGAAGC 1356
Query 2025 aaagctgagcgcagaagTGATAAGGAAGAAAGAGGCAAAAGAAAGAGCAAGGCAGGTGAA 2084
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1357 AAAGATGAGCGCAGAAGTGATAAGGAAGAAAGAGGCAAAAGAGAGAGCAAGGCAGGTGAA 1416
Query 2085 AAAGGCAGTACCAAAAATGAAGATGAGCCGTAGTCACTAG 2124
||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 AAAGGCAGTACCAAAAATGAAGATGAGCCGTAGTCACTAG 1456
> AT5G49940.1 | Symbols: NFU2, ATCNFU2 | NIFU-like protein 2 |
chr5:20315398-20317400 FORWARD LENGTH=946
Length=946
Score = 1064 bits (576), Expect = 0.0
Identities = 644/677 (95%), Gaps = 3/677 (0%)
Strand=Plus/Plus
Query 1 ATGCAATTGCTGACGCTAAACCCGCCGGCCATTTCCAGGACGCCGCCGCAAGCCCTAGAC 60
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 67 ATGCAATTGCTGACGCTAAATCCGGCGGCCATTTCCAGGACGCCGCCGCAAGCCATAGAC 126
Query 61 CCTTCCTCTTCCTCGAG---ACTTCTTCCTTCTCCTCAGATTTTGAGCTCCCAACGCGCT 117
|||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 127 CCTTCCTCATCCTCGAGTCTTCTTCTTCCTTTTCCTCAGATTTTGAGCTCCCAACGCGCT 186
Query 118 CTTAGTCTTGTTGCTAGGCCTTGTAATCCACTTCGACGAGGATTATCTAGGTCTTTATCA 177
||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 187 CTTGGTCTTGTAGCTAGGCCTTGTAATCCACTTCGACGAGGATTATCTAGGTTTTTATCA 246
Query 178 AGTCGACAACTTTTCCGACGATCGAAAGTTGTCAAGGCAGTAGCAACCCCAGACCCAATC 237
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 247 AGTCGACAGCTTTTCCGACGATCCAAAGTTGTCAAGGCAGTAGCAACCCCAGACCCCATC 306
Query 238 TTGGAAGTACCCCTAACTGAGGAAAATGTAGAAAGCGTTTTGGATGAACTCCGACCATAC 297
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 307 TTGGAAGTACCTTTAACTGAGGAAAATGTAGAAAGCGTTTTGGATGAAATCCGACCTTAC 366
Query 298 CTTATGTCTGATGGTGGTAATGTGGCATTACATGAGATCGATGGAAATATTGTGCGAGTT 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 CTTATGTCTGATGGTGGTAATGTGGCATTACATGAGATCGATGGAAATATTGTGCGGGTT 426
Query 358 AAGCTGCAGGGAGCATGCGGATCATGCCCAAGTTCTACTATGACGATGAAGATGGGAATT 417
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 427 AAGCTGCAGGGAGCATGCGGATCATGTCCAAGTTCTACTATGACAATGAAGATGGGTATT 486
Query 418 GAGCGTCGTCTAATGGAAAAAATCCCTGAAATAGTGGCTGTGGAAGCAGTTCCAGATGAA 477
|||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 487 GAGCGTCGTCTAATGGAAAAGATCCCTGAAATAGTGGCTGTAGAAGCTCTTCCAGATGAA 546
Query 478 GAGACTGGCCTTGAACTGAATGAGGAAAACATTGAAAAGGTGCTGGAAGAAATCAGGCCA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GAGACTGGCCTTGAACTGAATGAGGAAAACATTGAAAAGGTGCTGGAAGAAATCAGGCCT 606
Query 538 TACTTGATCGGAACAGCAGATGGATCGCTTGATCTAGTGGAAATCGAAGATCCAATCGTG 597
||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 607 TACTTAATCGGAACAGCAGATGGATCGCTTGATCTAGTGGAGATTGAAGATCCAATCGTG 666
Query 598 AAGATAAGAATCACAGGACCTGCAGCTGGAGTGATGACAGTTCGAGTAGCAGTCACTCAG 657
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 667 AAGATAAGAATCACAGGACCTGCAGCTGGAGTCATGACAGTTCGTGTAGCAGTCACTCAG 726
Query 658 AAACTAAGAGAGAAAAT 674
|||||||||||||||||
Sbjct 727 AAACTAAGAGAGAAAAT 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105320743410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5