BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg331685 Length=447 Score E Sequences producing significant alignments: (Bits) Value AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 ... 793 0.0 AT4G27960.2 | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | ... 617 2e-176 AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enz... 385 2e-106 > AT5G53300.1 | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632514-21634229 REVERSE LENGTH=876 Length=876 Score = 793 bits (429), Expect = 0.0 Identities = 441/447 (99%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 142 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTCCAGAAGGATCCACCTACATCA 201 Query 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 202 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCAACGATAATGGGTCCT 261 Query 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 262 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCGGATTAC 321 Query 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 322 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 381 Query 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 382 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 441 Query 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 501 Query 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 502 CCCGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGAAGC 561 Query 421 TGGACTCAGAAGTATGCCATGGGCTAA 447 ||||||||||||||||||||||||||| Sbjct 562 TGGACTCAGAAGTATGCCATGGGCTAA 588 > AT4G27960.2 | Symbols: UBC9 | ubiquitin conjugating enzyme 9 | chr4:13915820-13917420 REVERSE LENGTH=909 Length=909 Score = 617 bits (334), Expect = 2e-176 Identities = 408/445 (92%), Gaps = 0/445 (0%) Strand=Plus/Plus Query 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGATCCACCCACATCA 60 ||||| ||||| ||||| |||||||||||||||||||| ||||||||||| || || ||| Sbjct 218 ATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTCCTACTTCA 277 Query 61 TGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGGTCCT 120 ||||||||||| || ||||| |||||||||||||| |||||||| || ||||||||||| Sbjct 278 TGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTATAATGGGTCCA 337 Query 121 TCAGAGAGTCCTTATGCTGGAGGTGTTTTCCTTGTAACCATCCATTTCCCTCCAGATTAC 180 || || || |||||| ||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 338 TCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCCCTCCAGATTAC 397 Query 181 CCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCCAACATTAACAGC 240 ||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||| Sbjct 398 CCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACATTAACAGC 457 Query 241 AACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACCATTTCC 300 || || ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 458 AATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTCTCACAATTTCC 517 Query 301 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCTTTGGTG 360 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 518 AAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATGATCCTTTGGTC 577 Query 361 CCTGAGATAGCTCACATGTACAAGACTGACAAGAACAAGTACGAGTCCACTGCACGGAGC 420 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | Sbjct 578 CCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACTGCTCGGACC 637 Query 421 TGGACTCAGAAGTATGCCATGGGCT 445 ||||| || |||||||||||||||| Sbjct 638 TGGACCCAAAAGTATGCCATGGGCT 662 > AT5G41700.4 | Symbols: UBC8, ATUBC8 | ubiquitin conjugating enzyme 8 | chr5:16675842-16677509 FORWARD LENGTH=803 Length=803 Score = 385 bits (208), Expect = 2e-106 Identities = 374/454 (82%), Gaps = 11/454 (2%) Strand=Plus/Plus Query 1 ATGGCGTCGAAGCGGATCTTGAAGGAATTGAAGGATCTTCAGAAGGA---TCCACCCACA 57 ||||| ||||| |||||||||||||| |||||||||| ||||| || |||| || | Sbjct 68 ATGGCTTCGAAACGGATCTTGAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCC 127 Query 58 T-CATGTAGCGCAGGTCCTGTTGCTGAAGACATGTTTCACTGGCAGGCGACGATAATGGG 116 | ||| | |||||||| |||||||||||||||||||| ||||| || || || ||||| Sbjct 128 TGCAT-TTTTGCAGGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGG 186 Query 117 TCCTTCAGAGAGTCCTTATGCTGGAGGTGT-TTTCCTTGTAACCATCCATTTCCCTCCAG 175 |||| |||||||||| ||| | || ||||| ||| || || ||||| || |||||||| | Sbjct 187 TCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTT-CTCGTTACCATTCACTTCCCTCCGG 245 Query 176 ATTACCCATTCAAGCCTCCTAAGGTGGCCTTTAGGACCAAGGTGTTCCATCCC-AACATT 234 | || |||||||| || || ||||| || |||||||| |||||||| || ||| || || Sbjct 246 ACTATCCATTCAAACCACCAAAGGTTGCATTTAGGACGAAGGTGTTTCA-CCCTAATATC 304 Query 235 AACAGCAACGGTAGCATTTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCGCTCACC 294 ||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||| |||||| Sbjct 305 AACAGCAACGGAAGCATTTGCCTTGACATTTTGAAAGAACAATGGAGCCCTGCCCTCACC 364 Query 295 ATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACCGATCCAAACCCGGATGATCCT 354 |||||||||||| |||| ||||| ||||| ||||||| |||||||| || ||||| ||| Sbjct 365 ATTTCCAAGGTGTTGCTCTCGATATGTTCGCTGTTAACAGATCCAAATCCAGATGACCCT 424 Query 355 TTGGTGCCTGAGATAGCTCACATGTACAAGACTGACAAGA-ACAAGTACGAGTCCACTGC 413 ||||| || ||||| || ||||||||||| || ||| ||| ||| |||||| | ||||| Sbjct 425 TTGGTACCAGAGATTGCACACATGTACAAAACCGAC-AGAGCCAAATACGAGGCTACTGC 483 Query 414 ACGGAGCTGGACTCAGAAGTATGCCATGGGCTAA 447 | | | |||||||||||||||||||||||||||| Sbjct 484 AAGAAACTGGACTCAGAAGTATGCCATGGGCTAA 517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21263257827 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5