BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg331872
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55440.1 | Symbols: | Protein of unknown function (DUF295) ... 1640 0.0
AT5G67040.1 | Symbols: | Protein of unknown function (DUF295) ... 383 2e-105
> AT5G55440.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:22465693-22467209 FORWARD LENGTH=1343
Length=1343
Score = 1640 bits (888), Expect = 0.0
Identities = 1030/1100 (94%), Gaps = 4/1100 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCTGTTTTTCAGCCGAATCTCAAAGCTCTCTGTACGCAAGAACAATGCTCGTTTC 60
||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 26 ATGGCTCTGTTCTTCAGCCGAATCTCAAAGCTTTCTGGACGCAGGAACAATGCTCGTTTC 85
Query 61 TTCTCATCATTGCCTCAGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAGAGTCT 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 86 TTCTCATCATTGCCTCCGTCCCCATGCTTGGTGCTGACCACTAAGAAGTTGCGAGGGTCT 145
Query 121 CCAGAGGAGGGCCTAATCGTGCATCAAAAGTTATTCGACCCGACAACAGAAAAGAAAGTG 180
|||||||||||||||||||||||||| ||||||||||| ||| | || ||||| ||||||
Sbjct 146 CCAGAGGAGGGCCTAATCGTGCATCACAAGTTATTCGAACCGGCTACGGAAAAAAAAGTG 205
Query 181 TACAGCAAGGAGAAGAAGTATCCCAAAGAGCTTCGTGGAGCTCCTCTTCTGGGAGCATCG 240
||| |||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 206 TACGGCAATGAGAAGAAGTATCCCAAAGAGCTTCATGGAGCTCCGCTTCTGGGAGCATCG 265
Query 241 AAAGGTTGGGTCGCTTCTTTCAAGGAGAAAGACATTACCGTGCATCTCACGGATCTGTAC 300
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 266 AAAGGTTGGGTCGCTTTTTTCAAGGAGAAAGACATTAGTGTGCATCTCACGGATCTGTAC 325
Query 301 AAGCCTTGTGTCTCATCTCCACGAGTCATATCATTACCATCACTC-CGGTCTGAGTATAA 359
||||||||||||||||||||| ||||||||||||||||||||||| | || || |||||
Sbjct 326 AAGCCTTGTGTCTCATCTCCAAGAGTCATATCATTACCATCACTCAAGCTC-GACTATAA 384
Query 360 ACCCTCATCTTATGCCACCGAAGTGTGTCTCTCTTCTTCTGATCCTGTCCAAGACGACTA 419
|||| || || ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 385 ACCCGCAACTCATGCCACGGAAGTGTGTCTCTCTTCGTCTGATCCTGTCCAAGACGACTA 444
Query 420 TTATGTGGCTGCAAAGTTCAATGACTATCACGTAAGCGTATGTAGGCCTCGACGGGACTC 479
||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 445 TTACGTGGCTGCAAAGTTCAATGACTATCACGTAAGTGTATGTAGGCCTCGTTGGGACTC 504
Query 480 TGAGTGGACTCACAACAAGACCGGTTACACTCTTTTACCAGCCTCTGAGCTCATGTTCTC 539
||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct 505 TGACTGGACTCACAACGAGACCGGTTACAGTCTTTTACCAGCCTCTGAGCTCATGTACTC 564
Query 540 CAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAAGGTCTCTACATGGGTTCTCTGTA 599
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 565 CAAGAGAGACAAAGCCTTCCACTTTACGAGTTTTAAGGGTCTCTACATGGGTTCTCTGTA 624
Query 600 TCTCAGTAACAACGACGAGATCAAGTATAAAGAGATACGCCTTAGAAACCTGCCTAAGAT 659
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TCTCAGTAAAAAAGACGAGATCAAGTATAAAGAGATACGCCTTAGAAACCTGCCTAAGAT 684
Query 660 TCCAGAGGCAGGTTGGGAGATGTTAGATAAATGTTCCATGACCAACCACTTAGTGGAATC 719
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 685 TCCAGAGGCAGGTTGGGAGATGTTGGATAAATGTTCCATGACCAATCACTTAGTGGATTC 744
Query 720 TCCCTGTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTCTTCACAAAGAGGACGA 779
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 745 TCCCTCTGGTGAACTTTTCTTCATCAAGTGGTACACACAGTGTATTCACAAAGAGGACGA 804
Query 780 AGATGGGGATTTGGAATTTATCCACAGCAGTACTAAGCGGTTCATGGTCTTTAGGCAAGA 839
||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||
Sbjct 805 AGATGGGGATTTGGAATGTCTCCACAGCAAAACTAAGCGGTTCATGGTCTTTAGGCAAGA 864
Query 840 TGGGACGAGCAAAGACTTTTGTTACACTGAAGATATTGGAGATCTCTGCATCTTCCTTAG 899
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 865 TGGGATGAGCAAAGACTTTGGTTACACTGAAGATATTGGAGATCTCTGCATCTTCCTTGG 924
Query 900 CGGGAGTGAAGCCTTCTGTGTCACGGCAAGCCTGTCCCCGGGGCTCAAACCTAACTCCAT 959
| ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 925 CAAGAGTGAAGCCTTCTGTGTCACGGCAAGTTTGTACCCAGGGCTCAAACCTAACTCCAT 984
Query 960 CTATTACCTTGGCCCTAGACTTGGTTCTTACGATCTAGCTTCTGGTACAAACAGT-CCAT 1018
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 985 CTATTACCTTGGCCCTAGATTTGGTTCTTACGATCTAGCTTCTGGTACAAACAGTTCC-T 1043
Query 1019 TCAAGTTCGATCGCTTTGGTAAACCCTCACTGGTCGTCCCTTTCTGGATCCATTCGACCT 1078
||| |||||||||||||||||||||||| || || ||||||| ||||||||||||||| |
Sbjct 1044 TCACGTTCGATCGCTTTGGTAAACCCTCGCTTGTTGTCCCTTACTGGATCCATTCGACAT 1103
Query 1079 CTTCTCTGAGTTCTAGCTAG 1098
|||||||||| |||||||||
Sbjct 1104 CTTCTCTGAGCTCTAGCTAG 1123
> AT5G67040.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:26757896-26758475 REVERSE LENGTH=498
Length=498
Score = 383 bits (207), Expect = 2e-105
Identities = 357/429 (83%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 586 ATGGGTTCTCTGTATCT---CAGTAACAACGACGAGATCAAGTAT-AAAGAGA-TACGCC 640
|||||||| ||| |||| ||| |||||| || || |||||||| ||| | | | ||||
Sbjct 1 ATGGGTTCACTGCATCTCAACAGCAACAACAACAAGCTCAAGTATCAAA-A-ACTGCGCC 58
Query 641 T-TAGAAACCTGCCTAAGATTCCAGAGGCAGGTTGGGAGATGTTAGATAAATGTTCCATG 699
| | ||||| || |||||||| || |||||| |||||||||| ||| |||||| ||||
Sbjct 59 TCT-CCAACCTCCCCAAGATTCCTGACGCAGGTCGGGAGATGTTGGATCAATGTTTCATG 117
Query 700 ACCAACCACTTAGTGGAATCTCCCTGTGGTGAACTTTTCTTCATCAAGTGGTACACACAG 759
| ||| ||||| ||||||||||||| ||||||||||||||| |||| |||||| ||||
Sbjct 118 AGCAAGCACTTGGTGGAATCTCCCTCTGGTGAACTTTTCTTGGTCAACTGGTACGCACAA 177
Query 760 TGTC-TTCACAAAGAGGACGAAGATGGGGATTTGGAATTTATCCACAGCAGTACTAAGCG 818
|| | |||||| |||||| |||| || || ||||| | ||||||||| || |||||
Sbjct 178 TG-CATTCACACAGAGGAAAAAGACGGAGAAGTGGAAGGTCTCCACAGCAAAACCAAGCG 236
Query 819 GTTCATGGTCTTTAGGCAAGATGGGACGAGCAAAGACTTTTGTTACACTGAAGATATTGG 878
|||||||||||||||| |||||| || ||||||||||||| ||||||| |||||||||||
Sbjct 237 GTTCATGGTCTTTAGGGAAGATGAGAAGAGCAAAGACTTTAGTTACACGGAAGATATTGG 296
Query 879 AGATCTCTGCATCTTCCTTAGCGGGAGTGAAGCCTTCTGTGTCACGGCAAGCCTGTCCCC 938
||||||||||||||||||| ||| |||||||| ||||| ||||||||||| ||| |||
Sbjct 297 AGATCTCTGCATCTTCCTTGGCGCAAGTGAAGCGTTCTGCCTCACGGCAAGCATGTACCC 356
Query 939 GGGGCTCAAACCTAACTCCATCTATTACCTTGGCCCTAGACTTGGTTCTTACGATCTAGC 998
|||||| ||||||||||| ||||||||| |||||| | | |||||||| ||||||||| |
Sbjct 357 GGGGCTTAAACCTAACTCTATCTATTACATTGGCCATGGTCTTGGTTCATACGATCTAAC 416
Query 999 TTCTGGTAC 1007
||||||||
Sbjct 417 CTCTGGTAC 425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5