BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332111

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:23...   817    0.0  


> AT5G58240.1 | Symbols: FHIT | FRAGILE HISTIDINE TRIAD | chr5:23558114-23559353 
REVERSE LENGTH=818
Length=818

 Score =  817 bits (442),  Expect = 0.0
 Identities = 466/478 (97%), Gaps = 0/478 (0%)
 Strand=Plus/Plus

Query  90   GTCTACTTGTTCTTCGTACGCATTTGGGCCTTACAAAATCGATCCTCGTGAAGTGTTCTA  149
            |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct  106  GTCTACTTGTTCTTCGTACGCATTTGGGCCGTACAAAATCGATCCCCGTGAAGTGTTCTA  165

Query  150  CGCAACGCCTCTCTCTTATGCCATGGTTAATCTCCGTCCGCTTCTTCCTGGTCATGTTCT  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct  166  CGCAACGCCTCTCTCTTATGCCATGGTTAATCTCCGTCCGCTTCTTCCTGCACATGTTCT  225

Query  210  TGTCTGCCCGAGGCGCCTTGTGCCACGATTTACTGATCTTACAGCTGATGAGACCAGTGA  269
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  226  TGTCTGCCCGAGACGCCTTGTGCCACGATTTACTGATCTTACAGCTGATGAGACCAGTGA  285

Query  270  TCTGTGGCTTACTGCTCAGAAGGTTGGCTCTAAGCTTGAGACCTTCCATAATGCGTCTTC  329
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  286  CCTGTGGCTTACTGCTCAGAAGGTTGGCTCTAAGCTTGAGACCTTCCATAATGCGTCTTC  345

Query  330  TCTCACATTAGCTATCCAAGATGGCCCTCAAGCGGGACAGACTGTTCCCCATGTACACAT  389
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  TCTCACATTAGCCATCCAAGATGGCCCTCAAGCGGGACAGACTGTTCCCCATGTACACAT  405

Query  390  TCACATCTTGCCTCGTAAAGGTGGTGACTTTGAGAAGAATGATGAAATCTATGATGCTCT  449
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  TCATATCTTGCCTCGTAAAGGTGGTGACTTTGAGAAGAATGATGAAATCTATGATGCTCT  465

Query  450  TGATGACAAGGAGAAGGAACTGAAGCAGAAGCTTGATCTAGATAAAGACCGGGTTGATAG  509
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  466  TGATGAGAAGGAGAAGGAACTGAAGCAGAAGCTTGATCTAGATAAAGACCGGGTTGATAG  525

Query  510  GGGCATTCAGGAGATGGCTGACGAGGCTTCCAAATACAGATCTCTTTTTGATTGCTAG  567
            | ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct  526  GAGCATTCAGGAGATGGCTGACGAGGCTTCCCAATACAGATCTCTTTTCGATTGCTAG  583



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27226907674


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5