BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332145

Length=1524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58560.1 | Symbols:  | Phosphatidate cytidylyltransferase fa...  1096    0.0  
  AT5G58575.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Sgf11, tr...   782    0.0  
  AT5G58570.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   195    1e-48


> AT5G58560.1 | Symbols:  | Phosphatidate cytidylyltransferase 
family protein | chr5:23670395-23672877 FORWARD LENGTH=1349
Length=1349

 Score = 1096 bits (593),  Expect = 0.0
 Identities = 759/836 (91%), Gaps = 23/836 (3%)
 Strand=Plus/Plus

Query  7    ACTACTACTAAGctctccgttctctgctgctctttcatttcatctcctctcattgactct  66
            |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  134  ACTACTACAAAGCTCTCCGTTCTCTGCTGCTCTTTCATTTCATCTCCTCTCGTTGACTCT  193

Query  67   cctccttctccCGCCAACATCCCTCGCTTCTTCTCTCCGATTCCACGA-T-TCC---TCA  121
            |||||||||| ||||  | || ||| |   ||| |  ||||||| | | | |||   || 
Sbjct  194  CCTCCTTCTCTCGCCTTCTTCTCTC-C-GATTC-C-ACGATTCCTC-ACTGTCCGAATCG  248

Query  122  CTACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCGACCGAAATCCGTAAGTC-T-ACTCG  179
            | |||||||||||||||||||||||||||||||| ||| ||||||| ||||| | |||||
Sbjct  249  CGACTAGCTTTAGATCGAGCTCTAGGTTTCCGGCCACCAAAATCCGCAAGTCTTCACTCG  308

Query  180  GAGTC-TAACGACGT-C-G--TCTTCCACTCGCCGC-CATGTCTGCGCGTTTGGAGTCAC  233
              | | | | |   | | |    || |  |     |  ||||||||||||||||||||||
Sbjct  309  CCGCCGTGATG-TTTCCGGAAAATT-CGGTTTTATCAGATGTCTGCGCGTTTGGAGTCAC  366

Query  234  TAGCATCGTTGCGTTCTCTTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCCTCTT  293
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  367  TAGCATCGTTGCGTTCTCGTGCCTCGGTTTCTGGGGAGAGATTGGCAAACGTGGCATCTT  426

Query  294  GGACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTG  353
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  CGACCAGAAACTCATCCGGAAGCTTGTGCATATAAATATTGGGCTAGTTTTTATGCTTTG  486

Query  354  CTGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTTGCATCTCTTGTACCTGGACT  413
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  487  CTGGCCGCTGTTCAGTTCTGGAATCCAAGGAGCACTTTTCGCATCTCTTGTACCTGGACT  546

Query  414  CAATATAATAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACGATCAA  473
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  547  CAATATAGTAAGGATGCTATTGCTGGGGCTTGGAGTGTACCACGACGAAGGAACAATCAA  606

Query  474  GTCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGACCGCTTTACTATGCACT  533
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct  607  GTCAATGAGCAGACATGGAGATCGCAGGGAACTACTTAAGGGGCCGCTTTACTATGTACT  666

Query  534  GTCAATCACATCAGCCTGCATCTTCTATTGGAAGTCATCCCCAATCGCCATTGCAGTCAT  593
            ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| || ||
Sbjct  667  GTCAATCACATCAGCCTGCATCTACTATTGGAAATCATCCCCAATCGCGATTGCGGTGAT  726

Query  594  ATGCAACCTTTGCGCAGGAGATGGTATGGCTGACATCGTGGGTCGGCGGTTTGGAACAGA  653
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  727  ATGCAACCTTTGCGCAGGAGATGGTATGGCTGACATTGTGGGTCGGCGGTTTGGAACAGA  786

Query  654  GAAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCGGG  713
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  787  GAAGCTTCCTTACAACAAAAACAAATCATTTGCTGGTAGCATTGGAATGGCCACCGCCGG  846

Query  714  GTT-CTTAGCATCTGTTGGGTATATGTTCTACTTTGCTTCATTCGGTTACATCAAGGATA  772
            ||| || ||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||
Sbjct  847  GTTTCT-AGCATCTGTTGCGTATATGTACTACTTTGCTTCATTTGGTTACATCGAGGATA  905

Query  773  GCGGGGGAATGATTCTTCGTTTCCTCATCATCTCTTTAGCATCAGCTCTTGTCGGA  828
            |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct  906  GCGGGGGAATGATTCTTCGTTTCCTCGTCATCTCTATAGCATCAGCTCTTGT-GGA  960


> AT5G58575.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Sgf11, 
transcriptional regulation (InterPro:IPR013246); Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr5:23674000-23675498 FORWARD LENGTH=956
Length=956

 Score =  782 bits (423),  Expect = 0.0
 Identities = 479/507 (94%), Gaps = 0/507 (0%)
 Strand=Plus/Plus

Query  1018  CTTTCGTCCCAAGTTTTTCTTGATCTTGTGGATTCGGTGATTGCTGATGTAGCATCTGAG  1077
             |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  176   CTTTCGTCCCAAATTTTTCTTGATCTTGTGGATTCGGTGATAGCTGATGTAGCATCTGAG  235

Query  1078  TGTCATCGGGTAGCACGACTAGGACTTGATCGTGATTTGGAGGTAGTAGAAGAAGAGTTG  1137
             |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct  236   TGTCATCGGGTAGCACGACTAGGACTTGATCGTGATTTGGATATAGTAGAAGAAGAGTTG  295

Query  1138  AGGTTGTCAGTGGAAGCGTGTGCTAAGGTCGCTGATCCTAGCAACAACCTTGAAACCAAC  1197
             || ||||||||||||||| |||| ||| |||||||||||||||||||||| |||||||||
Sbjct  296   AGATTGTCAGTGGAAGCGCGTGCGAAGATCGCTGATCCTAGCAACAACCTCGAAACCAAC  355

Query  1198  ACCAAATTTGTTGTTGATATTTTTGGTCAGACTCACCCTCCTGTAGCTACTGAAGTGTTC  1257
             ||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct  356   ACCAAATATGTTGTTGATATATTTGGGCAGACTCACCCTCCTGTAGCTAGTGAAGTGTTC  415

Query  1258  AATTGCATGAACTGTGGGCGACAAATTGTTGCAGGAAGGTTTGCTCCTCATTTGGAAAAA  1317
             ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct  416   AATTGCATGAACTGTGGGCGACAAATTGTTGCAGGAAGGTTTGCTCCTCATCTCGAAAAA  475

Query  1318  TGCATGGGGAAGGGAAGAAAGGCTCGTGCCAAGACAACCAGGAGCACAACAGCTGCCCAG  1377
             |||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct  476   TGCATGGGAAAGGGAAGAAAGGCTCGTGCCAAGACAACCAGAAGCACAACGGCTGCACAG  535

Query  1378  AACAGGAACGCACGACGCAGCCCAAATCCGCGATATTCTCCTTATCCAAATTCTGCTAGT  1437
             ||| |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct  536   AACCGGAATGCACGACGCAGCCCCAATCCACGATATTCTCCTTATCCAAATTCTGCTAGT  595

Query  1438  GAGAACCAGTTAGCAAGTGGATCACCTGGTGTTGCTGGTGAAGACTGCTCAAATGGCACA  1497
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||
Sbjct  596   GAGAACCAGTTAGCAAGTGGATCACCTGGTGTTGCAGGTGAAGACTGCTCAAATTTCACA  655

Query  1498  GTCCGAGAGAATGTGAAAGGAGACTGA  1524
             || |||||||| |||||||||||||||
Sbjct  656   GTTCGAGAGAACGTGAAAGGAGACTGA  682


> AT5G58570.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23672695-23673287 
REVERSE LENGTH=593
Length=593

 Score =  195 bits (105),  Expect = 1e-48
 Identities = 121/129 (94%), Gaps = 0/129 (0%)
 Strand=Plus/Minus

Query  823  GTCGGACTGGTGACTGTAACGGCGTTTCAGACAAGGAAGCAATACAAGGAACAAGAGAAA  882
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct  343  GTCGGACTGGTGACTGTAACGGCGTTTCAGACAAGGAAGCAACACGAGGAACAAGAGGAA  284

Query  883  GAGGGCAAACCCGATGACAAGAACTACTGTCAAGATCTCACCATGCATGGCGTAGTGTCT  942
            || ||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  283  GACGGCGAAGCTGATGACAAGAACTACCGTCAAGATCTCACCATGCATGGCGTAGTGTCT  224

Query  943  GTCTCTAGT  951
            |||||||||
Sbjct  223  GTCTCTAGT  215



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 75200416410


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5