BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332244
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59740.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transpo... 1712 0.0
AT3G46180.1 | Symbols: UTR5, ATUTR5 | UDP-galactose transporter... 1053 0.0
> AT5G59740.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transporter
family | chr5:24070051-24073055 REVERSE LENGTH=1495
Length=1495
Score = 1712 bits (927), Expect = 0.0
Identities = 1000/1036 (97%), Gaps = 2/1036 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGAGCCGGAAACAGTAAACGGAGGAGTGAAAGAGAACAAATTATGGAAAGGAGTA 60
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 202 ATGGCTGAGCCAGAATTAGTAAACGGAGGAGTGAAAGAGAACAAATTATGGAAAGGTGTA 261
Query 61 TTCGCAGTTTCCGGCATTATGTCTACTCTTGTAATCTATGGTGTTCTTCAGGAGAAGATA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 262 TTCGCAGTTTCCGGCATTATGTCTACTCTTGTAATCTACGGTGTTCTTCAGGAGAAGATA 321
Query 121 ATGAGAGTTCCTTATGGAGTGAACAAAGA-TTATTTTAAACACTCTTTGTTTCTTGTTTT 179
|||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||
Sbjct 322 ATGAGAGTTCCTTATGGAGTGAACAAGGAGTT-TTTTAAGCACTCTTTGTTTCTTGTTTT 380
Query 180 CTGCAATCGGCTCACTACATCAGCTGTCTCTGCTGGTGCTTTATTGGCAAGCAAGAAAGT 239
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 381 CTGCAATCGGCTTACTACATCAGCTGTCTCTGCTGGTGCTTTACTGGCAAGCAAGAAAGT 440
Query 240 TTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCTTAAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCTTAAC 500
Query 300 CACAACATGCCAATACGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTGCAAA 359
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TACAACATGTCAATATGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTGCAAA 560
Query 360 ATGTGCTAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAGTATAA 419
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GTGTGCCAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAGTATAA 620
Query 420 GGGATTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATTCTTTT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 621 GGGCTTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATTCTCTT 680
Query 480 TCCGGCAGGAGATGATGTTAGTCCGTACAATAAGGGAAGGGAAAATACTGTTTGGGGTGT 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 681 TCCGGCAGGAGATGATGTTAGTCCATACAATAAGGGAAGGGAAAATACTGTTTGGGGTGT 740
Query 540 TTCCCTTATGGCTGGTTATCTGGGGTTTGACGGCTTTACAAGCACATTCCAAGACAAGCT 599
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 741 TTCCCTTATGGCTGGTTATCTTGGGTTTGACGGCTTTACAAGTACATTCCAAGACAAGCT 800
Query 600 CTTTAAAGGATATAATATGGAGATACATAACCAAATATTCTACACAACACTTTGTTCTTG 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CTTTAAAGGATATAACATGGAGATACATAACCAAATATTCTACACAACACTTTGTTCTTG 860
Query 660 TGTTTTGAGTTTCACAGGACTTATATTGCAAGGGCATTTACTACCAGCTATAGATTTTGT 719
||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 861 TGTTTTGAGTTTCACTGGACTTATATTGCAAGGGCATCTACTACCAGCTGTAGATTTTGT 920
Query 720 TTCTCTGCATAGGGATTGTTTACTCGACATCGCTCTGCTTTCTACGGTTGCAACAGCAAG 779
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 921 TTCTCTGCATAGGGATTGTTTACTCGACATCGCTCTGCTTTCCACAGTTGCAACAGCGAG 980
Query 780 CCAGTTCTTCATTTCGTACACAATTAGGACATTTGGTGCTCTAACATTTGCTGCAATCAT 839
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 CCAGTTCTTCATTTCTTACACAATTAGGACATTTGGTGCTCTAACATTTGCTGCAATCAT 1040
Query 840 GACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCATCCTCTTAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 GACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCATCCTCTTAG 1100
Query 900 CTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGATCTTTATACGCGAAAAACTTACT 959
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1101 CTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGGTCTTTATATGCGAAAAACTTACT 1160
Query 960 GAACAACAAGAAAAAATCACAAACGCAACCATCGCCTCCAGAACTTCCGCAGTACGAAAA 1019
||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1161 GAACAACAAGAAAAATTCACAAACGCAACCACCACCTCCAGAACTTCCGCAGTACGAAAA 1220
Query 1020 GGCTGAGGGCTCTTAA 1035
|| |||| ||||||||
Sbjct 1221 GGTTGAGAGCTCTTAA 1236
> AT3G46180.1 | Symbols: UTR5, ATUTR5 | UDP-galactose transporter
5 | chr3:16954365-16956833 REVERSE LENGTH=1383
Length=1383
Score = 1053 bits (570), Expect = 0.0
Identities = 836/965 (87%), Gaps = 15/965 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGAGCCGGAAACAGTAAACGGAG--GAGTGA-AAG-AGAACAAATTATGGAAAGG 56
||||||||||| || | ||||||| || || || ||| |||| || |||||||||
Sbjct 34 ATGGCTGAGCCAGATTCTGTAAACGAAGCCAAG-GAGAAGAAGAAGAAGCTATGGAAAGC 92
Query 57 AGTATTCGCAGTTTCCGGCATTATGTCT-ACTCTTGTAATCTATGGTGTTCTTCAGGAGA 115
|| |||||| | || || || ||| || ||||| || ||||||||| |||||||||| |
Sbjct 93 TGTTTTCGCAATCTCTGGGATCATG-CTCACTCTCGTCATCTATGGTCTTCTTCAGGAAA 151
Query 116 AGATAATGAGAGTTCCTTATGGAGTGAACAAAGATTATTTTAAACACTCTTTGTTTCTTG 175
|||| |||||||| ||||||||| |||| ||||| || ||||| ||||||||||||||||
Sbjct 152 AGATCATGAGAGTACCTTATGGATTGAAAAAAGAGTACTTTAAGCACTCTTTGTTTCTTG 211
Query 176 TTTTCTGCAATCGGCTCACTACATCAGCTGTCTCTGCTGGTGCTTTATTGGCAAGCAAGA 235
||||||| ||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||
Sbjct 212 TTTTCTGTAATCGTCTCACTACATCAGCTGTTTCTGCTGCTGCTTTACTGGCAAGCAAGA 271
Query 236 AAGTTTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACATCT 295
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 272 AAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTTATATCAGTAACTAACATCT 331
Query 296 TAACCACAACATGCCAATACGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCTTG 355
||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |||
Sbjct 332 TAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTTTCCCAGTCCAAACT-TTG 390
Query 356 -CAAAATGTGCTAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAGAAG 414
| |||||||| || |||||||| |||||||| |||||||| |||||||||||||| |||
Sbjct 391 GCTAAATGTGCCAAGATGATACCTGTAATGGTTTGGGGAACTCTCATTATGCAGAAAAAG 450
Query 415 TATAAGGGATTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTTTATT 474
|||| ||||||||| ||| ||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 451 TATAGGGGATTTGATTATCTAGTGGCCTTTCTCGTGACTCTTGGCTGCTCTGTGTTTATT 510
Query 475 CTTTTTCCGGCAGGAGATGATGTTAGTCCGTACAATAAGGGAAGGGAAAATACTGTTTGG 534
||||||||||| ||||||||| ||||||||||||| |||||||| ||||||||||| |||
Sbjct 511 CTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAAGAGAAAATACTGTGTGG 570
Query 535 GGTGTTTCCCTTATGGCTGGTTATCTGGGGTTTGACGGCTTTACAAGCACATTCCAAGAC 594
||||| |||||||||| ||||||||| |||||||| || |||||||||||||||||||||
Sbjct 571 GGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTACAAGCACATTCCAAGAC 630
Query 595 AAGCTCTTTAAAGGATATAATATGGAGATACATAACCAAATATTCTACACAACACTTTGT 654
|| || |||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 631 AAACTTTTTAAAGGTTATAATATGGAAATACATAACCAGATATTCTACACAACAATTTGT 690
Query 655 TCTTGTGTT-TTGAGTTTCACAGGACTTATATTGCAAGGGCATTTACTACCAGCTA-TAG 712
|| | | || || ||||| || || |||||||||||||| |||||||| ||||| | |||
Sbjct 691 TCCTCTATTCTT-AGTTTTACTGGCCTTATATTGCAAGGACATTTACTCCCAGC-AGTAG 748
Query 713 ATTTTGTTTCTCTG-CATAGGGATTGTTTACTCGACATCGCTCTGCTTTCTACGGTTGCA 771
| |||||||||| | ||||||||||| || | ||||| ||| ||||||| || || |||
Sbjct 749 ACTTTGTTTCTC-GACATAGGGATTGCCTATTTGACATAGCTTTGCTTTCCACTGTAGCA 807
Query 772 ACAGCAAGCCAGTTCTTCATTTCGTACACAATTAGGACATTTGGTGCTCTAACATTTGCT 831
||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 808 ACAGCCAGCCAATTTTTCATTTCCTACACCATTAGGACATTTGGTGCTCTAACGTTTGCT 867
Query 832 GCAATCATGACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCTCAT 891
|| || ||||| || || |||||||| |||||||||||||| ||||||||||| || ||
Sbjct 868 GCCATAATGACTACAAGGCAGCTTGCCAGCATCATGCTCTCCTGCATTTGGTTCTCACAC 927
Query 892 CCTCTTAGCTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGATCTTTATACGCGAAA 951
|| |||||||||||||| ||||| ||||| || || |||||||||||| |||| || |||
Sbjct 928 CCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGATCTCTATATGCTAAA 987
Query 952 AACTT 956
| |||
Sbjct 988 ACCTT 992
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5