BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332511
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62840.1 | Symbols: | Phosphoglycerate mutase family protei... 1413 0.0
> AT5G62840.1 | Symbols: | Phosphoglycerate mutase family protein
| chr5:25228225-25229683 REVERSE LENGTH=976
Length=976
Score = 1413 bits (765), Expect = 0.0
Identities = 852/894 (95%), Gaps = 6/894 (1%)
Strand=Plus/Plus
Query 1 ATGTTATCATCATCGCCGGCGGTCACCA----C-CAC-CGCACATCCTCCTCCATCACCG 54
|||||||||||||| ||||||||||||| | ||| | |||||||||||| || |||
Sbjct 12 ATGTTATCATCATCACCGGCGGTCACCACCGCCTCACACTTACATCCTCCTCCGTCGCCG 71
Query 55 GAAACCTACCAAATTCCTCTGAATTTACTTTCCTCGCCGCGTATTACTCGCCGAGACCTT 114
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 72 GAAACCTACCAAATTCCTCTGAATTTACTTTCCTCGCCGCATATTACCCGCCGAGACCTT 131
Query 115 TTCAAGACTCTATCCGTATGTATTGCCACACCATCACTCTCAGTCTCCATCGCCGCACCA 174
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 132 TTCAAAACTCTCTCCGTATGTATTGCCACACCATCACTCTCCGTCTCCATCGCCGCACCA 191
Query 175 ACCAACGCACGCGGCCTCTTTCAAATGCCGCCTCTCCGGCTATCTAATCGTTATTACCTT 234
| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 192 GCTAACGCACGCGGTCTCTTTCAAATGCCGCCTCTCCGGCTCTCTAATCGTTATTACCTT 251
Query 235 GTGAGAGCTGGGGAATCAGATTATGAGAGCTTAGGGATAATCAACACAAACCCGGTTGCC 294
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 252 GTGAGAGCTGGGGAATCAGATTACGAAAGCTTAGGGATAATCAACACAAACCCGGTTGCC 311
Query 295 AAAACATCGGTAGATAGCGGATTATCAGAGAAAGGTAAGAAGCAGACGCTGAGAGCTGCG 354
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 312 AAAACATCGGTAGATAGCGGATTATCAGAGAAAGGTAAGAAGCAGACTCTGAGAGCTGCG 371
Query 355 TTACAGCTAAAGGCAATGGGAGCTTGTGACCGAAACTGTTGGCTCTGGCCTTCCATAACA 414
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TTACAGTTAAAAGCAATGGGAGCTTGTGACCGAAACTGTTGGCTCTGGCCTTCCATAACA 431
Query 415 CAGAGAGCTTATCAGGCTGCTGAAATCATCGCCGCCATCAATGGAATCAGTCGCAGCTAT 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 432 CAGAGAGCTTATCAGGCTGCTGAAATCATCGCCGCCATCAATGGAATTAGTCGCAGCTAT 491
Query 475 ATAGTTCCGGAATATAGCTTCCTCGATGCTCGTGGTTTAGGAGCTTACGAAGGCAAGAAG 534
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 492 ATAGTTCCGGAGTATAGCTTCCTTGATGCTCGTGGTTTAGGAGCTTACGAAGGCAAGAAG 551
Query 535 CTAGAATCCATATCAGAAGTTTATGCATTAGACTCAATATCGATGAAGACAAAACCTCCT 594
|| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 552 CTTGAATCTATATCAGAAGTGTATGCATTAGACTCAATATCGATGAAGACAAAACCTCCT 611
Query 595 CCTATAAGCGACGGTACCCCCAATGAGAGTGTAGCAGATGTATTTGTGCGTGTGACGCAG 654
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 612 CCTATAAGCGACGGTACCCCCAACGAGAGTGTATCAGATGTATTTGTGCGTGTGACGCAA 671
Query 655 CTCATGTCTATTCTCGAGACTCAATACTCAGAGGACACAATCGTGATTGTTTCACCTGAT 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 672 CTCATGTCTATTCTCGAGACTCAATACTCAGAAGACACAATCGTGATTGTTTCGCCTGAT 731
Query 715 TCAGACAACTTATCGGTGTTACAAGCTGGTATTCAAGGACTCGACCTTCGCAGGCACTCA 774
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 732 TCAGACAACTTATCGGTGTTACAAGCTGGTATCCAAGGACTCGACCTTCGAAGGCACTCG 791
Query 775 GAGTTGTATTTTGGACCAGGAGAAGTAAGATTGTTAGATGCAAACAGCATTCCTGTGTAT 834
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 792 GAGTTGTATTTTGGACCAGGAGAAGTAAGATTGTTGGATGCAAACAGCATTCCAGTGTAT 851
Query 835 AAGCAACCTGCTTCTGCCGTATATAAGTGTAAGAACCCACCAAACTGTGACTAA 888
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 852 AAGCAACCTGCTTCTGCCGTATATAAGTGTAAGAAACCACCAAACTGTGACTAA 905
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5