BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332964

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66005.3 | Symbols:  | Expressed protein | chr5:26397672-263...   902    0.0  


> AT5G66005.3 | Symbols:  | Expressed protein | chr5:26397672-26399274 
REVERSE LENGTH=922
Length=922

 Score =  902 bits (488),  Expect = 0.0
 Identities = 549/579 (95%), Gaps = 2/579 (0%)
 Strand=Plus/Plus

Query  1    ATGGCAGGCACCGGGAAATGCCTTCTTGTCACCGGCCCTCCTGGTGTCGGAAAAACCACA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  ATGGCAGGCACCGGGAAATGCCTTCTTGTCACCGGCCCTCCTGGTGTCGGAAAAACCACA  211

Query  61   TTGATCATGAGAGTGTTCGACATGATTAGGGTTTCCAACCCTAACTTAAAGATCCAAGGT  120
            ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||
Sbjct  212  TTGATCATGAGAGTGTTGGATATGATGAGGGTTTCCAACCCTAACTTAAAAATCCAGGGT  271

Query  121  TTCTACACTCAAGAGATGAGGGAACGAGGACAAAGGGTTGGTTTTCAAGTGGTCACCTTG  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  272  TTCTACACTCAAGAGATGAGGGAACGAGGACAAAGGGTTGGTTTTCAAGTGGTCACTTTG  331

Query  181  GATGGCCGCACAAGTTTGCTTGCTTCTTCCACTGTTTCTAGTCAAGAATCAATGACATGG  240
            ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct  332  GATGGCCGCACAAGTTTGCTTGCTTCTTCTATTGTTTCTAGTCAAGAATCGATGACATGG  391

Query  241  CCTAATGTTGGCAAGTACAAAGTGGACATTGCATCCTTCGAGTCTATAGCATTGCCTGAG  300
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  392  CCTAGTGTTGGCAAGTACAAAGTGGACATTGCATCCTTCGAGTCTATAGCCTTGCCTGAG  451

Query  301  CTTCAGGTCAAAGACGATACCCATCTTTTCATCATTGATGAAGTTGGCAAGATGGAGATG  360
            || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  452  CTACAGGTCAAAGACGATACCAATCTTTTCATCATTGATGAAGTTGGCAAGATGGAGATG  511

Query  361  TTTAGTCCATCCTTCTTTCCGGCTGCCCTCAAGGTTTTGGGGTCCAACATTCCTCTTCTT  420
            |||||||||||||| |||||||||| |||||| |||||||  |||||| |||||||||||
Sbjct  512  TTTAGTCCATCCTTTTTTCCGGCTGTCCTCAATGTTTTGGACTCCAACGTTCCTCTTCTT  571

Query  421  ACTTCCATTCCTATCCCAAAATTTGGTCGAGATCTTCCTGGAGTGGCAAGGTTGAAGAAC  480
             |||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct  572  GCTTCCATTCCTAGCCCAAAATTTGGTCGACATCTTCCTGAAGTGGCAAGGTTGAAGAAC  631

Query  481  CAACCGGGAGTGACTGTAATCACCCTGAGTGAGAGTAACAGAGACTCC-ATGAAAGAACA  539
            ||||||||||||| ||||||| ||||||||| || ||||||||| ||| |||||||||||
Sbjct  632  CAACCGGGAGTGAATGTAATCTCCCTGAGTGCGACTAACAGAGA-TCCCATGAAAGAACA  690

Query  540  TATCTTTGATGTTTTCTCTGGATGGCTGCCCAAGCAATA  578
            ||||||||||||||||||||| |||||||||||||||||
Sbjct  691  TATCTTTGATGTTTTCTCTGGTTGGCTGCCCAAGCAATA  729



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5