BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333105
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr... 1330 0.0
> AT5G43760.1 | Symbols: KCS20 | 3-ketoacyl-CoA synthase 20 | chr5:17585763-17588597
FORWARD LENGTH=1841
Length=1841
Score = 1330 bits (720), Expect = 0.0
Identities = 764/786 (97%), Gaps = 0/786 (0%)
Strand=Plus/Plus
Query 1 ATGAGCCATAACCAAAACCAACCTCACCGGCCAGTCCCGGTCCATGTCACAAACGCCGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ATGAGCCATAACCAAAACCAACCTCACCGGCCAGTCCCGGTCCATGTCACAAACGCCGAG 200
Query 61 CCAAACCCTAACCCAAACAACCTCCCAAACTTTCTCTTATCCGTTCGTCTCAAATACGTA 120
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 201 CCAAACCCTAACCCAAACAACCTCCCAAACTTTCTATTATCCGTCCGTCTCAAATACGTA 260
Query 121 AAACTCGGTTACCATTACCTAATCTCCAACGCTCTCTACAtcctcctcctccctctcctc 180
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 261 AAACTCGGTTACCACTACCTAATCTCCAACGCTCTCTACATCCTCCTCCTTCCTCTCCTC 320
Query 181 GCCGCAACAATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 GCCGCAACAATCGCTAACCTCTCTTCTTTCACCATCAACGACCTCTCTCTCCTCTACAAC 380
Query 241 ACACTCCGTTTCCATTTCCTCTCCGCCACACTAGCCACCGGACTCTTAATCTCTCTCTCC 300
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 381 ACACTCCGTTTCCATTTCCTCTCCGCCACACTCGCCACCGCACTCTTAATCTCTCTCTCC 440
Query 301 ACCGCCTACTTCACCACACGTCCTCGCCGTGTCTTCCTCCTCGACTTCTCATGTTACAAA 360
||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 441 ACCGCTTACTTCACCACCCGTCCCCGCCGTGTCTTCCTCCTCGACTTCTCGTGTTACAAA 500
Query 361 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CCAGACCCTTCACTGATCTGCACTCGTGAAACATTCATGGACAGATCTCAACGTGTAGGC 560
Query 421 ATCTTCACAGAAGACAACCTAGCTTTCCAACAAAAGATCCTTGAAAGATCCGGTCTAGGT 480
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 561 ATCTTCACAGAAGACAACTTAGCTTTCCAACAAAAGATCCTCGAAAGATCCGGTCTAGGT 620
Query 481 CAAAAAACTTACTTCCCTGAAGCTCTTCTTCGTGTCCCTCCTAATCCTTGTATGGAAGAA 540
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 621 CAGAAAACTTACTTCCCTGAAGCTCTTCTTCGTGTTCCTCCTAATCCTTGTATGGAAGAA 680
Query 541 GCAAGAAAGGAGGCAGAGACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGACC 600
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GCGAGAAAAGAGGCAGAAACAGTTATGTTCGGAGCTATTGACGCGGTTCTTGAGAAGACC 740
Query 601 GGTGTTAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGTTTGTTTAATCCAACG 660
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 741 GGTGTGAAACCTAAAGATATTGGAATCCTTGTGGTGAATTGTAGCTTGTTTAATCCAACA 800
Query 661 CCGTCACTTTCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCTAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 CCGTCACTTTCTGCTATGATTGTGAATAAGTATAAGCTTAGAGGCAACATTTTGAGCTAT 860
Query 721 AATCTTGGTGGAATGGGATGTAGTGCTGGACTTATCTCCATTGATCTCGCTAAACAGATG 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 861 AATCTTGGTGGAATGGGATGTAGTGCTGGCCTTATCTCCATTGATCTCGCTAAACAGATG 920
Query 781 CTTCAG 786
||||||
Sbjct 921 CTTCAG 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5