BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333180
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32080.1 | Symbols: PUR ALPHA-1 | purin-rich alpha 1 | chr2:... 1367 0.0
> AT2G32080.1 | Symbols: PUR ALPHA-1 | purin-rich alpha 1 | chr2:13642237-13644166
REVERSE LENGTH=1500
Length=1500
Score = 1367 bits (740), Expect = 0.0
Identities = 827/865 (96%), Gaps = 21/865 (2%)
Strand=Plus/Plus
Query 19 GGAGGAGCTGAAGGCGGAAGAGCGGCAACC---------GGAGGAGGAGGAGGGAGCGAT 69
||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 155 GGAGGAGCTGAAGGCGGAAGAGCGGTAACCGGAGGAGGAGGAGGAGGAGGAGGGAGCGAT 214
Query 70 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTTTTCTATTTTGATCTTAAG 129
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 215 GTGGAATTGGTGAGCAAGACGTTGCAAGTGGAGCATAAGCTATTCTATTTTGATCTTAAG 274
Query 130 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 GAGAATCCTCGTGGAAGGTATCTAAAGATATCGGAGAAGACGTCGGCGACGAGGTCAACC 334
Query 190 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAATTACTATGTCAAT 249
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 335 ATCATTGTTCCTTCCTCCGGCATCTCTTGGTTCCTTGATCTCTTCAACTACTATGTCAAT 394
Query 250 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TCTGAGGAACACGAGCTTTTTAGCAAAGAATTGCAGCTTGATTCCAAGGTGTTTTACTTC 454
Query 310 GACATTGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 369
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 GATATCGGTGAGAACAGAAGAGGACGCTTCTTGAAGGTGTCAGAAGCATCGGTTAGTAGA 514
Query 370 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 AATCGAAGTACCATTATTGTTCCAGCTGGAAGCTCTCCTGATGAAGGATGGGCAGCTTTC 574
Query 430 AGGAATATATTGGCTGAGATTCATGAAGCATCAGGACTTTTTGTGATGCCAAATAAGGTG 489
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 575 AGGAATATATTGGCTGAGATACATGAAGCATCAGGACTTTTTGTGATGCCAAATCAGGTG 634
Query 490 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGGGCTGGATTTATACCTGGC 549
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 635 AAACCTTCTGATGGACAGGAACACTTGGTTGATGATGTTGGAGCTGGTTTTATACCTGGA 694
Query 550 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGATCAGTTGACTCGCCA 609
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 695 CATGGTAGTCAGCAGCCATCTTCTTCAGAACATAATGTGGATCGAACAATTGACTCGCCA 754
Query 610 GGCCAGGAAGAAAC-----TG--T--T-T--CTAAAGTAATCAGAGCTGACCAGAAACGG 657
|||||||||||||| || | | | |||||||||||||||||||||||||||||
Sbjct 755 GGCCAGGAAGAAACCGGAATGACTGGTGTTTCTAAAGTAATCAGAGCTGACCAGAAACGG 814
Query 658 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCCTGAGGATATCTGAGGTAGCA 717
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 815 TTCTTCTTTGATCTTGGGAACAATAACAGGGGCCATTTCTTAAGGATATCTGAGGTGGCA 874
Query 718 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GGTTCTGACAGGTCTTCCATCATTCTACCGTTATCGGGTCTTAAGCAGTTTCACGAAGTA 934
Query 778 ATTGGTCACTTTGTGGAGATCACCAAAGATAAGATTGAAGGTATGACGGGTGCAAATGTC 837
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 935 ATTGGTCACTTTGTGGAGATCACCAAAGATAAAATTGAAGGTATGACAGGTGCAAATGTC 994
Query 838 AGGACAGTTGATCCTCCTCAGAGAT 862
|||||||||||||||||||||||||
Sbjct 995 AGGACAGTTGATCCTCCTCAGAGAT 1019
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5