BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333305
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosin... 422 1e-117
> AT4G14680.1 | Symbols: APS3 | Pseudouridine synthase/archaeosine
transglycosylase-like family protein | chr4:8413288-8415391
REVERSE LENGTH=1633
Length=1633
Score = 422 bits (228), Expect = 1e-117
Identities = 254/267 (95%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGGACTCGAACGACTCAACATTCTTCCTTTCAGGGTTGCTGCTTACGATAAG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1212 ATGGCTCCTGGACTCGAACGACTCAACATTCTTCCTTTCAGGGTTGCTGCGTACGATAAG 1271
Query 61 ACACAAGGCAAGATGGCTTTCTTTGATCCCACTAGGGCACAGGATTTCTTGTTCATTTCT 120
|||||||| ||||||||||||||||||||| | ||||| ||||| |||||||||||||||
Sbjct 1272 ACACAAGGAAAGATGGCTTTCTTTGATCCCTCAAGGGCTCAGGACTTCTTGTTCATTTCT 1331
Query 121 GGCACTAAGATGAGAGCATTGGCAAAGAACAGAGAGAACCCTCCAGATGGATTTATGTGC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1332 GGCACTAAGATGAGAGCATTGGCAAAGAACAGAGAGAACCCACCAGATGGATTTATGTGC 1391
Query 181 CCTGGAGGCTGGAAGGTGCTTGTGGATTACTACGACAGTTTGACTGTAACCGGAAACACC 240
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1392 CCTGGAGGCTGGAAAGTCCTTGTGGATTACTACGACAGTTTGACACTAACCGGAAACACC 1451
Query 241 AAACTCCCCGAAAAGATTCCGGTTTAA 267
||||| || ||||||||||||||||||
Sbjct 1452 AAACTTCCGGAAAAGATTCCGGTTTAA 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12215063007
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5